BAC Information

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BAC

Clone NameMSMg01-431F10
Chromosome1 (Build37)
Map Location 65,987,126 - 65,987,564
singlet/doubletsinglet
Overlap genenone
Upstream gene9430067K14Rik, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf
Downstream geneLOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431F10.T7 (MSMg01no431_f10.b1)MSMg01-431F10.TJ (MSMg01no431_f10.g1)
ACCAG523620AG523621
length765764
length of high quality
(start - end)		471 (42 - 512)439 (70 - 508)
definitionCHROMAT_FILE: MSMg01no431_f10.b1 PHD_FILE: MSMg01no431_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:36 2005CHROMAT_FILE: MSMg01no431_f10.g1 PHD_FILE: MSMg01no431_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGATTACTACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
TTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGAGCATATA
TCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTA
CTACTCAGCTATTATAAAGAATGAATTTATGAAATTCCCAGCCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGGAACCATTCCCCAAGAAACT
CCCACATATGTACTCCCCGGATAAGGAAATTTTCCCCCCCCCTAGGATAC
CCCGAAATAAAAAAAATTTCCTATACCCTGGAATTCCAAAAAAAGAAAAA
TGATTTGTGGACCCCTATCCCCCCCTTTAAAAGGGGAAAAAAACTCCTTT
GGAGGGATTTTTGAA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTATAGATCTTTCATATATACTAAAGAAAA
AAATGACTTTTTTTTGTTCCCTTTATGCCACAGAAAAATCACTGTCTGAG
AATGAAGCTTGAGATTCCCTGTGGGATATTCAATTGTAAAGTGCCCCCCC
CAAAGGAAATAATGGACATAGTTTTATTTAATGATCATGAAATAAAATAT
ATTTCATCATTTATTGTGACCTCCCATCACCTGCAGAGCTTTTTGTTGTG
TGTAGACAGCAAGCAGTACCCATTCTCCTGCTGCTCAGTGGGGAAAGCTC
AGGCAAGACTACCTACTGAACTCAGGCTTCCCTTTTCTGTCAGGTTAGTA
TCTCTCCTTTTAACATTTTCCTCATGCATAGCATATGTCCCTAGTTTTAC
TTTTCTCATCCACTTGTTTTTTGATCAAGAATTCATTTAATAGGTTATTC
CCACAACAGCTGCCCACCAGACACATCCACATTCCATAGATTACTCTTAA
AGAAAAAAAAGTTTTCATAACTCATGAGATGTATTTTTTATGGAAGGGCC
ACATTCTTTTTATGAAACTTTTTGGGTCACCAAAGGTCCTTTTTTTTTAT
TATTCTTTTTCAGGATATAGCGCATTATTCTTTCTTATCCCTCCTTTATT
TAAAATAAAAATTCCTTGTCTTTTTGGTCCACCTTATGGTCTTTTTATCC
CCCCCTTCCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_f10.g1 MSMg01no431_f10.g1 CHROMAT_FILE:
MSMg01no431_f10.g1 PHD_FILE: MSMg01no431_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:36 2005
         (439 letters)



>mm_chr1_65986926_65987764
          Length = 839

 Score =  849 bits (439), Expect = 0.0
 Identities = 439/439 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatagatctttcatatatactaaagaaaaaaatgacttttttttgttccctttatgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tttatagatctttcatatatactaaagaaaaaaatgacttttttttgttccctttatgcc 580

                                                                       
Query: 61  acagaaaaatcactgtctgagaatgaagcttgagattccctgtgggatattcaattgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 acagaaaaatcactgtctgagaatgaagcttgagattccctgtgggatattcaattgtaa 520

                                                                       
Query: 121 agtgccccccccaaaggaaataatggacatagttttatttaatgatcatgaaataaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agtgccccccccaaaggaaataatggacatagttttatttaatgatcatgaaataaaata 460

                                                                       
Query: 181 tatttcatcatttattgtgacctcccatcacctgcagagctttttgttgtgtgtagacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tatttcatcatttattgtgacctcccatcacctgcagagctttttgttgtgtgtagacag 400

                                                                       
Query: 241 caagcagtacccattctcctgctgctcagtggggaaagctcaggcaagactacctactga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 caagcagtacccattctcctgctgctcagtggggaaagctcaggcaagactacctactga 340

                                                                       
Query: 301 actcaggcttcccttttctgtcaggttagtatctctccttttaacattttcctcatgcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 actcaggcttcccttttctgtcaggttagtatctctccttttaacattttcctcatgcat 280

                                                                       
Query: 361 agcatatgtccctagttttacttttctcatccacttgttttttgatcaagaattcattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agcatatgtccctagttttacttttctcatccacttgttttttgatcaagaattcattta 220

                              
Query: 421 ataggttattcccacaaca 439
           |||||||||||||||||||
Sbjct: 219 ataggttattcccacaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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