BAC Information

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BAC

Clone NameMSMg01-431F22
Chromosome1 (Build37)
Map Location 71,702,470 - 71,890,227
singlet/doubletdoublet
Overlap geneLOC100042814, Gabarapl2-ps1_652.1, LOC383528
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1
Downstream geneLOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431F22.T7 (MSMg01no431_f22.b1)MSMg01-431F22.TJ (MSMg01no431_f22.g1)
ACCAG523644AG523645
length798803
length of high quality
(start - end)		385 (34 - 418)377 (61 - 437)
definitionCHROMAT_FILE: MSMg01no431_f22.b1 PHD_FILE: MSMg01no431_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:39 2005CHROMAT_FILE: MSMg01no431_f22.g1 PHD_FILE: MSMg01no431_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,889,847 - 71,890,227)(71,702,470 - 71,702,846)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATAGGA
GTTGCTGCTGTTGCAGCTGAGGAAACACAACAAGATTTGGAGATCTGTGC
TTCTCTTCAGATGGCGAAGAATGTTTGAGAACGAATAAGAAGGTGAGGAA
AAACCATGCCATTTTTATGTAAAGAAAAGTTTAAAGGAAACATAGCCCAG
TACCTAAAAGAGAAGTGACTCCTATTTTTCAAAAGGATCTGTTTAAAATT
TTAGACAGGCAGTGCTTAATGTCCCATTTTTAAATTAATTTCTCCCTTCT
CTCAGCAGCACCAGGATAATTGCTGGCACAGTGACGACCCCCTTGCCAAG
CCATGCAAAGGGGAAGTGTGAAAAGAATTGGATGTATAGAAGAACGGCAG
AAACCTCATGCAATGTGTGTCCTAAACTGCCAAAATAATTACCTTCAGGG
TGGGCAGACAGCCAGACCGTGTCACTAGATTATAACGTTGCCTCGGTGCT
CCAAGTCCTAAAGCCTTTCTTTCTGGGGTTTAAATAATTTGGTGAAAAAG
GAGGTTTCGCCTAATTCTTGGTATTCCTTCCCGGGAAAAAAAATGGGGTC
TCGCGCTATAACCCAAACAATCTTTTTTTCTTGTATTCGCCTCTCTCACC
CAGTATTTATATTTTATTCCTCCTTCCTTGTTTCATTGGTTCTCTACCCT
CTTAATTTTCTATCTTTTCCCTTCCGTCTTCCCCTATCATGCTCCCCTCT
TTTTTCATCTACTTTTCTCTCCCTTCACTTTTATGTTTCCCCTTTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAGTATACTGGTGGCTTCTCTTTCCCCATCAGCTCCTTGGG
GGCACTAGCTGTCTGTGTGTGGCGGTATAAATGTGACCAAGACACATCTA
AGCATGAAGGACCATGCCTTGCCTTGCTTCCCCCTGTAATTGCCATGATG
GCAGGATTTTCCCAGTGAGTTTCTGACAACTTAAAATTTCACTGGGAAAA
AGAGAACACATACATCTGTGGGGTACGTTCTTCAGATGTTGGCTGTCGGA
GGGAGATGGTCAAGAGTGTGTGTGGTAGAGAGCTTGAGCTGGCTTGACTT
CTTTTGAGTTAAAATCGTAGTTGGGTGAAGAGCAAAGATAATTTATTAGA
CCCACTCACTCAGGACTGAAATAGAAACAGCTCACGGGATAAGTTTTAAG
GGTAAATTTTTTATGTCTAAGCATTTGGTGGGTGGTGTTTTTTTTTTTTT
ANAAATCCATATCCTCACCCCTTAATTCCTCTTTCTTTTTCTCTCTCCCT
CCTTTCTGCTTTTTTTTCCCTCCTTAATCTTCCCTATTCTTCCCATTTCC
TCCCCCCCATCTATCTTTTTTCTCCTATTTTATTCTTTCTCTCTAAACCT
TCTCTTATCGCCCATTCCTCTCCTATTTTCTTCTCCTTCTCTTATTCCTT
TTACATCCCTTCTCTTCTTCTTTATACCATCCCCTATTTCTCCTTACATT
ACCATTTTCTTTCTGTCCCTTATTACCCCTTTTTTTCCCTCCTTTTCTTC
TCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_f22.b1 MSMg01no431_f22.b1 CHROMAT_FILE:
MSMg01no431_f22.b1 PHD_FILE: MSMg01no431_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:39 2005
         (385 letters)



>mm_chr1_71889643_71890427
          Length = 785

 Score =  706 bits (365), Expect = 0.0
 Identities = 377/381 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccataggagttgctgctgttgcagctgaggaaacacaacaagatttggagatctg 64
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gaattccatacgagttgttgctgttgcagctgaggaaacacaacaagatttggagatctg 526

                                                                       
Query: 65  tgcttctcttcagatggcgaagaatgtttgagaacgaataagaaggtgaggaaaaaccat 124
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 525 tgcttctcttcagatggcgaagaatgtttgagaacgaataagaaggcgaggaaaaaccat 466

                                                                       
Query: 125 gccatttttatgtaaagaaaagtttaaaggaaacatagcccagtacctaaaagagaagtg 184
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gccatttttatgtaaagaagagtttaaaggaaacatagcccagtacctaaaagagaagtg 406

                                                                       
Query: 185 actcctatttttcaaaaggatctgtttaaaattttagacaggcagtgcttaatgtcccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 actcctatttttcaaaaggatctgtttaaaattttagacaggcagtgcttaatgtcccat 346

                                                                       
Query: 245 ttttaaattaatttctcccttctctcagcagcaccaggataattgctggcacagtgacga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttttaaattaatttctcccttctctcagcagcaccaggataattgctggcacagtgacga 286

                                                                       
Query: 305 cccccttgccaagccatgcaaaggggaagtgtgaaaagaattggatgtatagaagaacgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cccccttgccaagccatgcaaaggggaagtgtgaaaagaattggatgtatagaagaacgg 226

                                
Query: 365 cagaaacctcatgcaatgtgt 385
           |||||||||||||||||||||
Sbjct: 225 cagaaacctcatgcaatgtgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_f22.g1 MSMg01no431_f22.g1 CHROMAT_FILE:
MSMg01no431_f22.g1 PHD_FILE: MSMg01no431_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:39 2005
         (377 letters)



>mm_chr1_71702270_71703046
          Length = 777

 Score =  667 bits (345), Expect = 0.0
 Identities = 369/377 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatactggtggcttctctttccccatcagctccttgggggcactagctgtctgtgtgt 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtatactggtggcttctctttgcccatcagctccttgggggcactagctgtctgtgtgt 260

                                                                       
Query: 61  ggcggtataaatgtgaccaagacacatctaagcatgaaggaccatgccttgccttgcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcggtataaatgtgaccaagacacatctaagcatgaaggaccatgccttgccttgcttc 320

                                                                       
Query: 121 cccctgtaattgccatgatggcaggattttcccagtgagtttctgacaacttaaaatttc 180
           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 cccctgtaattgccaggatggcaggatttccccagtgagtttctgacaacttaaaatttc 380

                                                                       
Query: 181 actgggaaaaagagaacacatacatctgtggggtacgttcttcagatgttggctgtcgga 240
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actggggaaaagagaacgcatacatctgtggggtacgttcttcagatgttggctgtcgga 440

                                                                       
Query: 241 gggagatggtcaagagtgtgtgtggtagagagcttgagctggcttgacttcttttgagtt 300
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 gggagacggtcaagagtgtgtgtggtagagagcttgagctggtttgacttcttttgagtt 500

                                                                       
Query: 301 aaaatcgtagttgggtgaagagcaaagataatttattagacccactcactcaggactgaa 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagtcgtagttgggtgaagagcaaagataatttattagacccactcactcaggactgaa 560

                            
Query: 361 atagaaacagctcacgg 377
           |||||||||||||||||
Sbjct: 561 atagaaacagctcacgg 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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