Query= MSMg01no431_g09.b1 MSMg01no431_g09.b1 CHROMAT_FILE:
MSMg01no431_g09.b1 PHD_FILE: MSMg01no431_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:41 2005
(272 letters)
>mm_chr1_61040992_61041663
Length = 672
Score = 505 bits (261), Expect = e-147
Identities = 267/269 (99%), Gaps = 2/269 (0%)
Strand = Plus / Plus
Query: 5 gaattcctactgt-ttcccagatcccaggagcaatgcaattcttatccttgtagacttca 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctactgtgtt-ccagatcccaggagcaatgcaattcttatccttgtagacttca 263
Query: 64 tgattaaatgacaagaataattaggatctactatatatgttagaaatatgttggctaagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgattaaatgacaagaataattaggatctactatatatgttagaaatatgttggctaagt 323
Query: 124 aaaatgttaagagcatagagttaggagtctttgggcatctcagcaacagataaagggaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaatgttaagagcatagagttaggagtctttgggcatctcagcaacagataaagggaag 383
Query: 184 atttgctacttaaaacagttcttaaagaatgaaggagtatttctagtgggataaggggca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atttgctacttaaaacagttcttaaagaatgaaggagtatttctagtgggataaggggca 443
Query: 244 gattgaactttgtagtttgtagaaacaga 272
|||||||||||||||||||||||||||||
Sbjct: 444 gattgaactttgtagtttgtagaaacaga 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space: 174369
Effective search space used: 174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no431_g09.g1 MSMg01no431_g09.g1 CHROMAT_FILE:
MSMg01no431_g09.g1 PHD_FILE: MSMg01no431_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:41 2005
(412 letters)
>mm_chr1_61190313_61191123
Length = 811
Score = 766 bits (396), Expect = 0.0
Identities = 408/412 (99%), Gaps = 1/412 (0%)
Strand = Plus / Minus
Query: 1 tctgtttaacaaatattctccaatgacttctaactcatgccgaagtctaaaagtcattaa 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 611 tctgtttaacaaatattctccaatgacttctaactcatgccaaagtctaaaagtcattaa 552
Query: 61 catatactgtggtatagttttcagagcagagccttggagtcagactctgaactcaacctc 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 catatactgtggtgtagttttcagagcagagccttggagtcagactctgaactcaacctc 492
Query: 121 agttgcccagtctatcaagtaatgatgatcctgcctcctcccttaacctgttcttcagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agttgcccagtctatcaagtaatgatgatcctgcctcctcccttaacctgttcttcagat 432
Query: 181 tgaagaagacgctgcaagagagacggggtgggaagattaaagtgtaagttctcataaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgaagaagacgctgcaagagagacggggtgggaagattaaagtgtaagttctcataaaga 372
Query: 241 gcctcttcttctctgcctcccacaggatgctttatgcttctcctcggttcctggatctac 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gcctcttc-cctctgcctcccacaggatgctttatgcttctcctcggttcctggatctac 313
Query: 301 ccagggcactaagcacaggaagctacaagaggatggaaagataatgggtaaagagaaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ccagggcactaagcacaggaagctacaagaggatggaaagataatgggtaaagagaaaga 253
Query: 361 cgacagctgtggaccagtagatactgggaattagggagaagaggtagatggg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cgacagctgtggaccagtagatactgggaattagggagaagaggtagatggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 811
Length adjustment: 9
Effective length of query: 403
Effective length of database: 802
Effective search space: 323206
Effective search space used: 323206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
