BAC Information

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BAC

Clone NameMSMg01-431K06
Chromosome1 (Build37)
Map Location 67,905,835 - 68,071,484
singlet/doubletdoublet
Overlap genenone
Upstream geneAcadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
Downstream geneErbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431K06.T7 (MSMg01no431_k06.b1)MSMg01-431K06.TJ (MSMg01no431_k06.g1)
ACCAG523852AG523853
length753754
length of high quality
(start - end)		510 (42 - 551)421 (69 - 489)
definitionCHROMAT_FILE: MSMg01no431_k06.b1 PHD_FILE: MSMg01no431_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:03 2005CHROMAT_FILE: MSMg01no431_k06.g1 PHD_FILE: MSMg01no431_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,905,835 - 67,906,340)(68,071,064 - 68,071,484)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGATCCGCGGAATT
CAGATGGTTATACCCAAATTGGCATCACTGGCATAGTACTGGAGCACATT
TTGAAATAGAAAGAACTTTAGACAGGCAGCTTTCCATGAGATATAATGTA
TTTCATTTCCAAACATTTGTTTCTCTCCTTTTCAACAAATTAATGTCAAA
ACTACTACAGCTACAGATGAGCCTTTTGTAATTTGCTTCTTTCTTTTCCT
CTGTTCACTGGTATTCAGATATTTTCTGGCACACCCCCAGTTCATTGTGA
GCCCTTAAGGAATCATAATGTATGATAGCTTTCTGTCATTCCTAAGGTTA
GGAATGATAAAAGCAATGGCCATCTTAGAATTATGAATTTTTTCTGTCCA
AGATTTTCACATATATAGTGACAAATGTCATTGTCATTATGCTAAAAATA
TCTACTATATATTTTTATTTTCATAAGTATTGTCCTATAATGTGTGTGTG
CAATCACCAATAATAGTGAACAACATATAATCTCTAAGAATGGGGCCATA
AGGCTGACAAAACATTGTAGATTTACAAATGAAATCCAAAGGAAAACCAG
ATTCCCCACTTGAAAGCAAATTGAAGTATTTATTTCCTGGCTTACAAATT
GGTAACAGCCGGGTACAAGTGGGCACACACCCTTTATTTCCCTTACCTTG
GTAAAAAAAGAAAAGGCTTATATTTTAATTTCAGGCCCACCCTTGTCTAA
AAA

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGATGAAAGCTATTGAGCTCTTGCCTTTTTAT
ACTCTAATAAGATCTGCCTTTCCCTTGATTTAGAGTAATAGAGCTAATGT
AAAGAATATCTGCCTAGGGAAGCCTGCTGGAATGCCAGTGTTCAAGGTTT
CTATGGAGGGCTGATTGTGTAGGTACATCTTGCTATGCAAATAACCATGG
TAACAAATTCAGGGCCTTACCAATGAAGCTAGGAACATCATCAATCTTGA
TGTTTGTGTAAATTAATTCTTACAAGTCCTGTCAAGTTGATAAAATATAC
CTGATTACTTCAAGTCTGCATAACAACATCCACAATAGAATCTCAAATGT
ATTCTGAGGCCCATATCCCCAGCAGTTAGCCATGGGTAAACACTCCCCTG
GAGACATGTCACCATTGAACAATCAAACCCTTCATTGCCAATGTAACCCA
TCTAGCAGGAATGATGACTTTCTAAAGAGAGATTTATTCCTCCCCTGTTT
TTGACCCTCACATATTTAAGAAAATGGGCCCCAACAAATTGGATTTTCTT
ACAACTCCTGTTGTAAAGAAAAATGATGTTGTCTCCTTACTCCCCCAATG
ACGAATTTTTCCCCTATGGATAATTGCGCCCTTCCCTGTTTATTCCTTAT
GTTGAATCTCCTTTTACATTATGCCTTCTCCTTTTTTTCTCTTCCTATTT
CTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_k06.b1 MSMg01no431_k06.b1 CHROMAT_FILE:
MSMg01no431_k06.b1 PHD_FILE: MSMg01no431_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:03 2005
         (510 letters)



>mm_chr1_67905631_67906540
          Length = 910

 Score =  948 bits (490), Expect = 0.0
 Identities = 502/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagatggttatacccaaattggcatcactggcatagtactggagcacattttgaa 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagatggttagactcaaattggcatcactggcatagtactggagcacattttgaa 264

                                                                       
Query: 65  atagaaagaactttagacaggcagctttccatgagatataatgtatttcatttccaaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atagaaagaactttagacaggcagctttccatgagatataatgtatttcatttccaaaca 324

                                                                       
Query: 125 tttgtttctctccttttcaacaaattaatgtcaaaactactacagctacagatgagcctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgtttctctccttttcaacaaattaatgtcaaaactactacagctacagatgagcctt 384

                                                                       
Query: 185 ttgtaatttgcttctttcttttcctctgttcactggtattcagatattttctggcacacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtaatttgcttctttcttttcctctgttcactggtattcagatattttctggcacacc 444

                                                                       
Query: 245 cccagttcattgtgagcccttaaggaatcataatgtatgatagctttctgtcattcctaa 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 cccagttcattgtgagcccttaaggaatcataatggatgatagctttctgtcattcctaa 504

                                                                       
Query: 305 ggttaggaatgataaaagcaatggccatcttagaattatgaattttttctgtccaagatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggttaggaatgataaaagcaatggccatcttagaattatgaattttttctgtccaagatt 564

                                                                       
Query: 365 ttcacatatatagtgacaaatgtcattgtcattatgctaaaaatatctactatatatttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcacatatatagtgacaaatgtcattgtcattatgctaaaaatatctactatatatttt 624

                                                                       
Query: 425 tattttcataagtattgtcctataatgtgtgtgtgcaatcaccaataatagtgaacaaca 484
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 625 tattttcataagtattgtcctataatgtgtgtgtgcaatcaccaataaaagtgaacaaca 684

                                     
Query: 485 tataatctctaagaatggggccataa 510
           ||||||||||||||||||||||||||
Sbjct: 685 tataatctctaagaatggggccataa 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_k06.g1 MSMg01no431_k06.g1 CHROMAT_FILE:
MSMg01no431_k06.g1 PHD_FILE: MSMg01no431_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:03 2005
         (421 letters)



>mm_chr1_68070864_68071684
          Length = 821

 Score =  814 bits (421), Expect = 0.0
 Identities = 421/421 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgaaagctattgagctcttgcctttttatactctaataagatctgcctttcccttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatgaaagctattgagctcttgcctttttatactctaataagatctgcctttcccttga 562

                                                                       
Query: 61  tttagagtaatagagctaatgtaaagaatatctgcctagggaagcctgctggaatgccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttagagtaatagagctaatgtaaagaatatctgcctagggaagcctgctggaatgccag 502

                                                                       
Query: 121 tgttcaaggtttctatggagggctgattgtgtaggtacatcttgctatgcaaataaccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttcaaggtttctatggagggctgattgtgtaggtacatcttgctatgcaaataaccat 442

                                                                       
Query: 181 ggtaacaaattcagggccttaccaatgaagctaggaacatcatcaatcttgatgtttgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtaacaaattcagggccttaccaatgaagctaggaacatcatcaatcttgatgtttgtg 382

                                                                       
Query: 241 taaattaattcttacaagtcctgtcaagttgataaaatatacctgattacttcaagtctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaattaattcttacaagtcctgtcaagttgataaaatatacctgattacttcaagtctg 322

                                                                       
Query: 301 cataacaacatccacaatagaatctcaaatgtattctgaggcccatatccccagcagtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataacaacatccacaatagaatctcaaatgtattctgaggcccatatccccagcagtta 262

                                                                       
Query: 361 gccatgggtaaacactcccctggagacatgtcaccattgaacaatcaaacccttcattgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccatgggtaaacactcccctggagacatgtcaccattgaacaatcaaacccttcattgc 202

            
Query: 421 c 421
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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