BAC Information

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BAC

Clone NameMSMg01-432I15
Chromosome1 (Build37)
Map Location 44,121,687 - 44,271,598
singlet/doubletdoublet
Overlap geneEG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik
Upstream geneTgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik
Downstream geneLOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432I15.T7 (MSMg01no432_i15.b1)MSMg01-432I15.TJ (MSMg01no432_i15.g1)
ACCAG524534AG524535
length794801
length of high quality
(start - end)
466 (41 - 506)423 (70 - 492)
definitionCHROMAT_FILE: MSMg01no432_i15.b1 PHD_FILE: MSMg01no432_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:18 2005CHROMAT_FILE: MSMg01no432_i15.g1 PHD_FILE: MSMg01no432_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,271,147 - 44,271,598)(44,121,687 - 44,122,109)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCTAAAGAACCCATCAATGAAATGTGGCAGAATTGTGCTAATTTTCACA
TCACATTTGCAATCTCTTTTGTTCTCAGGAGAACAAGAACACGTGGTAGA
TTTTAAATCCCTGTCAGGAAAGATTAATAGCTTTAAAATGGTACAAAATA
TTTTGTATGAAAAAGCTCTAAGGTAGACAAACCTGGGATAATAACATAGT
TGTAAAACAATTCCTTGATTATGTATTTTATATATATATATAACTTCGCT
ACTTTGACTAGCCTGTGATATTTTACTAATCTGAGTTTTTTGTTTTGTTT
TGTTTTGTTTTGTTTTACTAAAATAGAACACTCATAAGATTCCAGAGCTG
GTTTTGCTTGAGAAAAACAGTGACTCCTCAGGCCACAGTTTTTTGTGGCC
AATATACAATGTCTGTGGGAGGTGTGTGACTCACAAACAGCTCTGGGATG
CTGTGTCATCGAGAATATGAGATGACCAGAATGACGAGTTTTTCAAGAAT
GTGGATATATTCCAATCTCTAAAAAGGAAGTTTTTAAGGGACAAAACTAG
GATTCTTTTGATTATAAGCCTCTACCTACCCCCTAGAGGTTTTTCCTTCC
CTAAAGGGACATTTCCTTCTTTGTTCCTGGGAGGTCCCACCTTTCTTTTT
TTTTTGGGTGGAATAAAAAAATGTTATCTTCTCTCCCACTTATTCTTCCT
TTTATTCCTTTTTTCTCGGGTTCCCCTCTCTTATTTTCACCCAT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAGTGACTCTAGGATTCTGAGTGGACTTTG
TATAGTTTCTCTGTGCAGTACCTGTTTTTTGTAGATCCTTTAGATCTGTG
CTGAGAGATGCCTGTGTTTTGGAACCTAATTCTGTGTCAGTTTCTCTTCC
AGAGAGATGGGAAATATTTTTTATGCTATGATACATACCCACTTTCTTAG
ATACCTTAGTGTTTTCTGAGTCAAAGGGCTCCGTAACTGAACAGACAACA
GACCCCAAGCCTACCTTGGAAGTGCTTTGTTGAAGGAGTTCTTGCACGTC
ACGTGTCTTTTTCTGGAAAGTATCCTGCTTCATGAGAAATATGGCATGCT
CTTTGGAACTTGAAATATTTGTTTTCTTGGGTCCTCCTCTTCTGGGTGGA
ATTGAAAGTGCATGTTTGATAGAGTCTTTCAAAACTCCTTGCTTTATGCT
TTGTGCAGTGGAGAATTCATGATCTGTCACGTTTCTGGTTCTTTGCACCT
CCTATCTTATGTTATCTTTTTTTTCTCCGTTTCTGAATATACACCCTGGC
ATTGCTTTTTGTTCCCTAATGGTTCGTTATCTCTTCCTTGTTTTTTTTTT
TCCTCTTGTGTTTTTTCTTTCGTTTTGGGTTCTCCTTTCTTTAGGTGTTT
TTCATTTTTTCTATACCCCTTTTGTTTTTCCTTTTCTTCTTTTTTTTTTT
CTTTTCTTTCCTTTTTATTTCCTCCTTTCTAACTCTTCTCTCACTATATT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_i15.b1 MSMg01no432_i15.b1 CHROMAT_FILE:
MSMg01no432_i15.b1 PHD_FILE: MSMg01no432_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:18 2005
         (466 letters)



>mm_chr1_44271103_44271967
          Length = 865

 Score =  779 bits (403), Expect = 0.0
 Identities = 443/459 (96%), Gaps = 8/459 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctaaag-aacccatcaatgaaatgtggcagaattgtgctaattttcacatca 63
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaattcttctaaagaaaagcatcaatgaaatgtggcagaattgtgctaattttcacatca 437

                                                                       
Query: 64  catttgcaatctcttttgttctcaggagaacaagaacacgtggtagattttaaatccctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 catttgcaatctcttttgttctcaggagaacaagaacacgtggtagattttaaatccctg 377

                                                                       
Query: 124 tcaggaaagattaatagctttaaaatggtacaaaatattttgtatgaaaaagctctaagg 183
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 376 tcaggaaagattaatagctttaaaatggtacagaatattttgtatgaaaaagctctaagg 317

                                                                       
Query: 184 tagacaaacctgggataataacatagttgtaaaacaattccttgattatgtattttatat 243
           ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||  ||||
Sbjct: 316 tagacaaacctgggataataacatagttgtaaagcaattccttgattatatatt--atat 259

                                                                       
Query: 244 atatatataacttcgctactttgactagcctgtgatattttactaatctgagttttttgt 303
           || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 258 atgtataaaacttcgctactttgactagcctgtgatattttactaatctgagtttttt-- 201

                                                                       
Query: 304 tttgttttgttttgttttgttttactaaaatagaacactcataagattccagagctggtt 363
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 --tgttttgttttgttttgttttactaaaatagaacactcataagattccagagctggtt 143

                                                                       
Query: 364 ttgcttgagaaaaacagtgactcctcaggccacagttttttgtggccaatatacaatgtc 423
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttgcttgagaaaaacagtgac-cctcaggccacagttttttgtggccaatatacaatgtc 84

                                                  
Query: 424 tgtgggaggtgtgtgactcacaaacagctctgggatgct 462
           |||||||||||||||||||| ||||||||||||||||||
Sbjct: 83  tgtgggaggtgtgtgactcataaacagctctgggatgct 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 865
Length adjustment: 10
Effective length of query: 456
Effective length of database: 855
Effective search space:   389880
Effective search space used:   389880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no432_i15.g1 MSMg01no432_i15.g1 CHROMAT_FILE:
MSMg01no432_i15.g1 PHD_FILE: MSMg01no432_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:18 2005
         (423 letters)



>mm_chr1_44121487_44122309
          Length = 823

 Score =  810 bits (419), Expect = 0.0
 Identities = 422/423 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtgactctaggattctgagtggactttgtatagtttctctgtgcagtacctgttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtgactctaggattctgagtggactttgtatagtttctctgtgcagtacctgttttt 260

                                                                       
Query: 61  tgtagatcctttagatctgtgctgagagatgcctgtgttttggaacctaattctgtgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtagatcctttagatctgtgctgagagatgcctgtgttttggaacctaattctgtgtca 320

                                                                       
Query: 121 gtttctcttccagagagatgggaaatattttttatgctatgatacatacccactttctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttctcttccagagagatgggaaatattttttatgctatgatacatacccactttctta 380

                                                                       
Query: 181 gataccttagtgttttctgagtcaaagggctccgtaactgaacagacaacagaccccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gataccttagtgttttctgagtcaaagggctccgtaactgaacagacaacagaccccaag 440

                                                                       
Query: 241 cctaccttggaagtgctttgttgaaggagttcttgcacgtcacgtgtctttttctggaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctaccttggaagtgctttgttgaaggagttcttgcacgtcacgtgtctttttctggaaa 500

                                                                       
Query: 301 gtatcctgcttcatgagaaatatggcatgctctttggaacttgaaatatttgttttcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtatcctgcttcatgagaaatatggcatgctctttggaacttgaaatatttgttttcttg 560

                                                                       
Query: 361 ggtcctcctcttctgggtggaattgaaagtgcatgtttgatagagtctttcaaaactcct 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 ggtcctcctcttctgggtggaattgaaagtgcatgtttgatggagtctttcaaaactcct 620

              
Query: 421 tgc 423
           |||
Sbjct: 621 tgc 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)