BAC Information

Click to search

BAC

Clone NameMSMg01-432L11
Chromosome1 (Build37)
Map Location 83,248,876 - 83,249,328
singlet/doubletsinglet
Overlap genenone
Upstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614
Downstream gene4930544G21Rik, EG622958, 5033414K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432L11.T7 (MSMg01no432_l11.b1)MSMg01-432L11.TJ (MSMg01no432_l11.g1)
ACCAG524668AG524669
length785755
length of high quality
(start - end)		460 (39 - 498)440 (71 - 510)
definitionCHROMAT_FILE: MSMg01no432_l11.b1 PHD_FILE: MSMg01no432_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:33 2005CHROMAT_FILE: MSMg01no432_l11.g1 PHD_FILE: MSMg01no432_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
CAAAGGAGTGAGGATCTTTCAAATGCAAAACAACAACAACAAAAAGTTAA
CTTTCAAGGACACCCTTGAAGAACACTAAGCACCCCTCCTTTCCTATTAA
GAATCAGTGAAAGCTGAACAGAATAAGAGACAGGTGTAGACTTTAATGGG
TGGGGAGCTTTTTATGGTATTGATGAGAGAATACTTAGGTAGTCGTACTG
ACCTGTTGTTTATGTGTGAAGAACTAGGTTAGGCTTAAGCGATTCCTCCC
ACTCTGTTCATTTCATTCAAGTCTATCTGCCTTTAACTGGCCTCTGAATG
CTTATGATAATGCAGATGGATAACACTTAAAGCCATTCCAGTGTCACTAC
AACCTTCTCTATGCTGTATGTTTTCTAACGTTTTAGGTCAAACTTTCTCA
TGTGATTTAAATCAAAACCCATCATCTATAGACATCTATAGACCCCAAAA
AGCATAGTTATAGAATTGGCTTTTGCCTGACTCCTAAAGCTAACTTACAC
ATCTTTAGGATGCTCTGCCTGTTTCCTTTTAATTTTTGGAAATGTAACAT
ATTAAAAAAATCTGGTTTCCCGTTTTTCCCCATATTTATGACCTTTTCTG
GGTGGTTGGTCTTTATTTGGGTCGGATGGATGCTTTTCCCGCAAACGATT
TCCACTGCCTTCTTCGCCCTAATGTTCTTTTTTCATTTTTATATCCCATT
CGCTGGGGGGCTGGTGTCCTTCCATCCTATTATTG

TGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAGCTTCCGTGCAGTA
GCTGGATATAAAATTAACTCAAACAAATCAATGGCCTTTCTCTACACAAA
GGATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACTCTTCACAATAG
TCACAAATAATATAAAATAACTTGGTGTGACAGTAACTAAGGAAGTGAAA
GACCTGTATGATAAAAACTTAAAGTCTCTCAAGAAAGAAATTAAAAAAGA
TCTCAGAAGATGGAAAGATCTCTTATGCTCATGGATGGGCAGGATCAATA
TAGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATC
CCCATCAAAATTCCAACTCAATTCTTCACTGAGTTAGAAAGGGCAATTTG
CAAACTCATCTGGAATAACAAAAAAAAAAAAAAACAGGATAGCAAAAACT
CTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGAACTAAA
GCTGTACTACAGAGNCATTATGATAAAAACTGCATGGTACTGGTACAGAG
ACAAACAGGTAGATCAGGGGAATAGAATTGAAAACCCCGAAATTATCCCC
CCNCCCTTAGTCCCCTGGTCTTTGAAAAGGAAATAAAAACCTCCGCGGGA
AAAAAAAAGCATTTCTAAAATTTTGTGGGGCAACCGGGGGTATCATGAAA
AAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_l11.b1 MSMg01no432_l11.b1 CHROMAT_FILE:
MSMg01no432_l11.b1 PHD_FILE: MSMg01no432_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:33 2005
         (460 letters)



>mm_chr1_83248672_83249528
          Length = 857

 Score =  866 bits (448), Expect = 0.0
 Identities = 453/456 (99%), Gaps = 3/456 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccaaaggagtgaggatctttcaaatgcaaaacaacaacaacaaaaagttaact 64
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 205 gaattcaccaaaggagtgaggatctttcaaatgcaaaacaacaacaa---aaagttaact 261

                                                                       
Query: 65  ttcaaggacacccttgaagaacactaagcacccctcctttcctattaagaatcagtgaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttcaaggacacccttgaagaacactaagcacccctcctttcctattaagaatcagtgaaa 321

                                                                       
Query: 125 gctgaacagaataagagacaggtgtagactttaatgggtggggagctttttatggtattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gctgaacagaataagagacaggtgtagactttaatgggtggggagctttttatggtattg 381

                                                                       
Query: 185 atgagagaatacttaggtagtcgtactgacctgttgtttatgtgtgaagaactaggttag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atgagagaatacttaggtagtcgtactgacctgttgtttatgtgtgaagaactaggttag 441

                                                                       
Query: 245 gcttaagcgattcctcccactctgttcatttcattcaagtctatctgcctttaactggcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcttaagcgattcctcccactctgttcatttcattcaagtctatctgcctttaactggcc 501

                                                                       
Query: 305 tctgaatgcttatgataatgcagatggataacacttaaagccattccagtgtcactacaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tctgaatgcttatgataatgcagatggataacacttaaagccattccagtgtcactacaa 561

                                                                       
Query: 365 ccttctctatgctgtatgttttctaacgttttaggtcaaactttctcatgtgatttaaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccttctctatgctgtatgttttctaacgttttaggtcaaactttctcatgtgatttaaat 621

                                               
Query: 425 caaaacccatcatctatagacatctatagaccccaa 460
           ||||||||||||||||||||||||||||||||||||
Sbjct: 622 caaaacccatcatctatagacatctatagaccccaa 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 857
Length adjustment: 10
Effective length of query: 450
Effective length of database: 847
Effective search space:   381150
Effective search space used:   381150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |