Query= MSMg01no432_n04.b1 MSMg01no432_n04.b1 CHROMAT_FILE:
MSMg01no432_n04.b1 PHD_FILE: MSMg01no432_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:42 2005
(472 letters)
>mm_chr1_128062998_128063869
Length = 872
Score = 770 bits (398), Expect = 0.0
Identities = 433/446 (97%), Gaps = 4/446 (0%)
Strand = Plus / Minus
Query: 4 ggaattctctgaaattgcaaaactcattagggggaaagagtgagaacactctacatgctc 63
||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 445 ggaattctctgaaattggaaaattcattagggggaaagggtgagaacactctacatgctc 386
Query: 64 cactaagctaggaagttcagccgttgctttgatctggcccaagtaaagactcctgatcta 123
|| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 385 cattaagctaggaagttcagccgttgctttgagctggcccaactaaagactcctgatcta 326
Query: 124 ttgtgcctcccatcttgtttggaagtgtgaagggggcaacctggcccacctattattctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtgcctcccatcttgtttggaagtgtgaagggggcaacctggcccacctattattctt 266
Query: 184 tatgtcttatttatgaaacctgtaaacctctttcagtattaactttctacccagcatggc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 tatgtcttatttatgaaacctgtaaacctctttcagtattaactttctacccagtatggc 206
Query: 244 ttcaccaccaccaccaccaccaccaccaccaccacctccaccacaatggttctttaagat 303
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 ttcaccaccaccaccaccaccaccaccaccacc---tccaccacaatggttctttaagat 149
Query: 304 gtgaattctaggattgttgtgtttactttttctgaagagcaggggcaaa-tatctattca 362
||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 148 gtgaattctaggattcttgtgtttactttttctgaagagcagggggaaaatatctattca 89
Query: 363 ccccagacagggcacaaataaaggacagaagcagcaattctaccatagtgcatcttggtt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ccccagacagggcacaaataaaggacagaagcagcaattctaccatagtgcatcttggtt 29
Query: 423 gaaccagtaagtttattaggctcact 448
||||||||||||||||||||||||||
Sbjct: 28 gaaccagtaagtttattaggctcact 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no432_n04.g1 MSMg01no432_n04.g1 CHROMAT_FILE:
MSMg01no432_n04.g1 PHD_FILE: MSMg01no432_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:42 2005
(489 letters)
>mm_chr1_127884075_127884958
Length = 884
Score = 899 bits (465), Expect = 0.0
Identities = 481/489 (98%), Gaps = 5/489 (1%)
Strand = Plus / Plus
Query: 1 cagaacagtcagggaccttgttcaaataaacaaggtgtatagcacttgagaaatagctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaacagtcagggaccttgttcaaataaacaaggtgtatagcacttgagaaatagctga 260
Query: 61 tcacacacagatatacacatgcatgcatgcacactcacacacacccctacctcagccaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacacacagatatacacatgcatgcatgcacactcacacacacccctacctcagccaaa 320
Query: 121 cacataatgaaaatctaccacaacacaacagccatcttattattgggcacaatttcctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacataatgaaaatctaccacaacacaacagccatcttattattgggcacaatttcctaa 380
Query: 181 tttggctataacccaagtggtcatgtaaatatgccttggtaagcatcatttccaggtttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttggctataacccaagtggtcatgtaaatatgccttggtaagcatcatttccaggtttg 440
Query: 241 tacatatctttaagcaacatggtgtggtactggcaataaaacttagaccacagacgggag 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacacatctttaagcaacatggtgtggtactggcaataaaacttagaccacagacgggag 500
Query: 301 cacagatttctttatttgcacatccctctcttcatctgtctggctgaaatgcgcttaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacagatttctttatttgcacatccctctcttcatctgtctggctgaaatgcgcttaagg 560
Query: 361 agaaaaaaatccaagccagttgccaaaaccctatccattaaacataggttatttgtttta 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 agaaaaaaatccaagccagttgccaaaaccctatccattaaccataggttatttgtttta 620
Query: 421 agtttactccacagtgttgttgttttttttttttttcaggcagtacaaaaaaataaataa 480
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 621 agtttactccacagtgttgct-----ttttttttttcaggcagtacaaaaaaataaataa 675
Query: 481 ataatgtgg 489
|||||||||
Sbjct: 676 ataatgtgg 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 884
Length adjustment: 10
Effective length of query: 479
Effective length of database: 874
Effective search space: 418646
Effective search space used: 418646
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
