BAC Information

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BAC

Clone NameMSMg01-433A17
Chromosome1 (Build37)
Map Location 188,619,775 - 188,620,181
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677785, Lyplal1, Tgfb2, Rrp15
Downstream geneLOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433A17.T7 (MSMg01no433_a17.b1)MSMg01-433A17.TJ (MSMg01no433_a17.g1)
ACCAG524918AG524919
length797781
length of high quality
(start - end)		75 (62 - 136)403 (64 - 466)
definitionCHROMAT_FILE: MSMg01no433_a17.b1 PHD_FILE: MSMg01no433_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:01 2005CHROMAT_FILE: MSMg01no433_a17.g1 PHD_FILE: MSMg01no433_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCTGG
ACTTTCTGCCAATACTTTTTATAGACAGAAACAAACATTTAGAAGGGGAA
ATGTAAACATTAAATAAGTGGTCTAAGTTTTGGGGGCTTTTTTGTTTTTT
GTTCCCTGCCCCCCACACCCCCACAACACCCACACCCACCAGTGACGCCC
CCCGAGCACCACACAACAGAAACCCGCGACAGCCCCATGACCTCTCACAC
AACCACACACATACCGTACCTACCAACAGCCCAGGCCACCACCAGAAGCC
CCCCCCTCCTTCTTGAGACCCCCCACGGCCCGCGTCCCCAACCAAGCCCG
TTCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCTCCCTCCCCCCCCACC
CCCCCCCCCCCCCCCCCCCCACACCCCCCTCCCATCACCCCCCCCCCTCC
CCCTTCCACCCACCCCATACCACTTAATCCTTCCACCCCCTCCCCCCCCC
CCCCCCCACCTCTACCCCCACAAACCCCCCCCACCCCCACCCTCCCCATC
CCCCCCCCCCCCCCCTCCATACCCTTCCCCTCCACCCCCCCCTCCCACAA
CCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCTATTCCCCCATCCCCC
CCCCCCCCACCCCCCCCCCCACCCCCCACCTCCCCCCACCCCCCCCCCCC
CTCTACCCCCACCCCCCCACNCCCACCCCCTAGCCGACCCCCCCCCCCCA
TCCCAACCGCCCGCCCCCACCCCCACCCCCCCCCTACCCACCCTCCT

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGAAGGACCTGCCATTGCACGGGTGCTCCATCCAT
GTTTTGGCTTAAAAGAGAAAATGTGTCTTTCATGCGGGCCTATTGTTTTA
TATGCAAATTCCTTTCTGGGTTTTCTGTGCAATTCTTAGGGTTCAATTCA
TTACTCCTGATCATTATTCAATTTGTTGGGCTTTGAGCACCTGAATAATT
GAAAGGTATGCAAGTGTTATAAATTATATTGTCCAGGTTCATAATCTCCA
TTTTAGTATTTATAGCTCCGCTGTAAAACTTCACTGTGTCGGAACCTCAC
ATACAAGCTCTGATATTGAAAACAAATCAATTTGTAAATACTTTTTTTTT
TTTTTTTTAGTACTCTGAATTCTTTTATCAAATTTTACACTTTTTCAGCT
GTGGTTTTTATGGCTTTGGGTGCCACAGCCACACCACTAATCAGTATATC
TCGCAGGCTGACTTATTCATTTTTTCATGACAAATGTTTATTAACACTCA
CGGGATAGTGGTCGGCTGTTTTTTCACTCTCTTTTTACAATAACGCTACC
TTCCCCGTTTATATATATCAAACTTTCCTTTTCTTTACTTCCCTCCCTCT
TTTCATACCCTTCCTCCCTTTTTCGTCTATTTCTCTCGCGCTCTTTCGCC
TCTTCCCTTTTGTATTTAGTACTCACCTTTTTTTCTCTGCCCTTTCCCCA
TATTTCCCATCCTTTTTCCCCCCTCCATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_a17.g1 MSMg01no433_a17.g1 CHROMAT_FILE:
MSMg01no433_a17.g1 PHD_FILE: MSMg01no433_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:01 2005
         (403 letters)



>mm_chr1_188619575_188620381
          Length = 807

 Score =  752 bits (389), Expect = 0.0
 Identities = 401/407 (98%), Gaps = 4/407 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaaggacctgccattgcacgggtgctccatccatgttttggcttaaaagagaaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaaggacctgccattgcacgggtgctccatccatgttttggcttaaaagagaaaatg 260

                                                                       
Query: 61  tgtctttcatgcgggcctattgttttatatgcaaattcctttctgggttttctgtgcaat 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tgtctttcatgcgggcctattgttttatatgcatattcctttctgggttttctgtgcaat 320

                                                                       
Query: 121 tcttagggttcaattcattactcctgatcattattcaatttgttgggctttgagcacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttagggttcaattcattactcctgatcattattcaatttgttgggctttgagcacctg 380

                                                                       
Query: 181 aataattgaaaggtatgcaagtgttataaattatattgtccaggttcataatctccattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataattgaaaggtatgcaagtgttataaattatattgtccaggttcataatctccattt 440

                                                                       
Query: 241 tagtatttatagctccgctgtaaaacttcactgtgtcggaacctcacatacaagctctga 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtatttatagctccgctgtaaaaattcactgtgtcggaacctcacatacaagctctga 500

                                                                       
Query: 301 tattgaaaacaaatcaatttgtaaatacttttttttttttttttt----agtactctgaa 356
           |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 501 tattgaaaacaaatcaatttgtaaatactttttttttttttttttttttagtactctgaa 560

                                                          
Query: 357 ttcttttatcaaattttacactttttcagctgtggtttttatggctt 403
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcttttatcaaattttacactttttcagctgtggtttttatggctt 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 807
Length adjustment: 9
Effective length of query: 394
Effective length of database: 798
Effective search space:   314412
Effective search space used:   314412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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