BAC Information

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BAC

Clone NameMSMg01-433C07
Chromosome1 (Build37)
Map Location 49,120,179 - 49,120,701
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
Downstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981, EG666962
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433C07.T7 (MSMg01no433_c07.b1)MSMg01-433C07.TJ (MSMg01no433_c07.g1)
ACCAG524994AG524995
length710770
length of high quality
(start - end)
526 (64 - 589)65 (178 - 242)
definitionCHROMAT_FILE: MSMg01no433_c07.b1 PHD_FILE: MSMg01no433_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:09 2005CHROMAT_FILE: MSMg01no433_c07.g1 PHD_FILE: MSMg01no433_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
GGTTACTAAACAAAATACCTAAAAATAAAGTATATGTAGTATTACAACAT
AATTTATACTATAGTGTACTATTATACATTTATATAAATAATGTAAGTTT
TGGCTTATGAAACATTAAAGGATTTTTAGAACCTTTTCTCTTAACACACA
GTTAATTTTCAATAAAATATATTGCTTAACTAATAGTTCTCAAAACTACT
TGTTAGTAATACTGTTGCTTTGCTTAGTAATAATAGAAGAAAAGACATTT
CTTTGTTATTTTGAGCAAATGAACTCACATACTTGCAAACTGTTTTTTTT
TTTCATTCATACAGCATGCAAGTTAAGATGTTATTGAACATTTTTAGCCA
TATTGCACTTTGAAATGAAGGTAGTCTTTACCAACCTAGTAGTGTCAAAA
TTGCAAGAAAGCACTAGTTATATGCAATATCTAATTTTAGAAGTTTTTGT
TTGTTTGTTTGTTTGTTTGGTTGTTTGTTTGTTTTTCCGGTATCCATTCC
TGCCGTTTTGTTTTCTTGCTCTAACCCTTTTATTACTACTCTTTGCCCCG
TTACGTTTGTCAGTGGATGCTCCCCATGTATTTTCTGCTCACTAACCAGA
GGGTTGCTATCTTTTCCCTATTATTCCTAAGAAACATACTTTGGTAATCT
TGAACTAAAA
GTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACGACTGGTCATGAGAAACTCAATAATTTCT
ATATTGTAAATACAGTGATATGTGCTGCTGTGTGTGACGATATGCGAGCA
TGTGTGTGTGTGTATGAGGGCATGGGTGTGTTCATGAGTCTGTGCGTGTG
TGTGTTCATTTGTCTGCGTTTTGTGTCTTTTCTTTCCCAGATATATGTCA
CATTTCATTTATTGTCACAACTGCTTCTGATAACATTTGTCTCCTGCTTG
ATGTCACAATTTCTCTTGTCCTTACTAGCCATGCCAATGTTATATTTTTC
TTCTGTATGCTACCCCAATATTTACTGATCTTCCTTGCCTGTATATTTAA
TGAATAGACATTGCTTTTTTATTCACCCATACATGCCCGTTTTAATATTT
ACTGCTTATAATTTTAAGTTATTCCCCTCTATCCACCTCCTCACTTAATC
CCTTATTCCTGTCTTTTGTGCTTCCATTTACCTTTTCCCTTTCTTTTTCT
CTTCTTCTTTCCCATTGACTCCCTTCCACTTATTTTTTTTTCCTCCCTTC
CTTACTCGTCCTTCTCTTCCTCTTCTCTTCCTCCTTCATCCATTTTTCCT
TCTTCTTTCTCTCATTTCTTTTTCACTCTTTTCCCTTTCCATTCTCTCTT
TCCTCCCCTTTATTCTCCTTCCCTTTCCCTCCTTATTTCCCCTTTCTTTA
TTTCTCCTTCTTCACTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_c07.b1 MSMg01no433_c07.b1 CHROMAT_FILE:
MSMg01no433_c07.b1 PHD_FILE: MSMg01no433_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:09 2005
         (526 letters)



>mm_chr1_49120067_49120999
          Length = 933

 Score =  837 bits (433), Expect = 0.0
 Identities = 502/533 (94%), Gaps = 17/533 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatacctaaaaataaagtatatgtagtattacaacataatttatactatagtgtactatt 60
           |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| 
Sbjct: 635 aatacctaaaaataaagtatatgtagtattacaacatattttagactatagtgtactatc 576

                                                                       
Query: 61  atacatttatataaataatgtaag-ttttggcttatgaaacattaaaggatttttagaac 119
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 575 atacatttatataaataatgtaagtttttggcttatgaaacattaaaggttttttagaac 516

                                                                       
Query: 120 cttttctcttaacacacagttaattttcaataaaatatattgcttaactaatagttctca 179
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 515 cttttctcttaacacacagttaattttcaataaaatacattgcttaactaatagttctca 456

                                                                       
Query: 180 aaactacttgttagtaatactgttgctttgcttagtaataatagaagaaaagacatttct 239
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaactatttgttagtaatactgttgctttgcttagtaataatagaagaaaagacatttct 396

                                                                       
Query: 240 ttgttattttgagcaaatgaactcacatacttgcaaactg------tttttttttttcat 293
           ||||||   |||||||||||||||||||| ||||||||||      ||||||||||||||
Sbjct: 395 ttgttaaggtgagcaaatgaactcacataattgcaaactgttgttttttttttttttcat 336

                                                                       
Query: 294 tcatacagcatgcaagttaagatgttattgaacatttttagccatattgcactttgaaat 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tcatacagcatgcaagttaagatgttattgaacatttttagccatattgcactttgaaat 276

                                                                       
Query: 354 gaaggtagtctttaccaacctagtagtgtcaaaattgcaagaaagcactagttatatgca 413
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 275 gaaggtagtctttaccaacctagtagtgtcaaaattgcaagaaggcactagttatatgca 216

                                                                       
Query: 414 atatctaattttagaagtttttgtttgtttgtttgtttgtttggttgtttgtttgttttt 473
           ||||||||||||||| ||||||||||||||||||||||      |||||| |||   |||
Sbjct: 215 atatctaattttagaggtttttgtttgtttgtttgttt------ttgttt-ttt---ttt 166

                                                                
Query: 474 ccggtatccattcctgccgttttgttttcttgctctaacccttttattactac 526
           | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 165 ctggtatccattcctgccgttttgttttcttgttctaacccttttattactac 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 933
Length adjustment: 10
Effective length of query: 516
Effective length of database: 923
Effective search space:   476268
Effective search space used:   476268
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)