BAC Information

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BAC

Clone NameMSMg01-433E11
Chromosome1 (Build37)
Map Location 66,724,523 - 66,724,824
singlet/doubletsinglet
Overlap genenone
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik
Downstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433E11.T7 (MSMg01no433_e11.b1)MSMg01-433E11.TJ (MSMg01no433_e11.g1)
ACCAG525098AG525099
length727594
length of high quality
(start - end)
302 (311 - 612)---
definitionCHROMAT_FILE: MSMg01no433_e11.b1 PHD_FILE: MSMg01no433_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:19 2005CHROMAT_FILE: MSMg01no433_e11.g1 PHD_FILE: MSMg01no433_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXATTTCCAAGAGGATCCGCGGAATTCCTC
TTTACGAAAAAGAATGAAAGTATGTAAAGGCATTTTCCTCTTATTAAGTA
TGTAATCTTAATCACTAAAATAATATTTAAAAACAATCAGGAAAAGAATG
TAGCTAAATATCGTTTGATATTTGTTTTATTGTTAGACTCGACCAGCATG
ATCGAATCTGCTGGTATATTAACATAGTTCAGATACTCATGGTTCCCCCT
AAGAGCAGTGCGTTAGGCAGAGGAGTCTTTGTAGGTTATGAGTCCAATCT
GTAGTGNCTTAGGACACCACGCATGCTTACCCGATCCACTGTGGACTGCC
TCTTTCAGAATTTTCAGCTCGCTATTGAACTCTGCAATGAGAGAGCTCTT
GCATAAAGGGCGGGGGATGAAGCGCCGCTCCAGCTGGTCGGAGATGTGTT
GCCGGGCAGAAAGCTCCTCGTGATTTTCTGCTGGTTGGGCCAATAGCTAA
AACGAAGGTATTGCATATTCAGGACCCCGTTTACCCATGTATGATGCCTA
CTGACGTCATAGATACAGGAAGAACAGGAAGTAATGCATAGGAAGGGGCA
TGGCCCACACAATGCGATTGTTTTTTTTTTCTGCCCTAAAAAATTGGGAC
ATGAGAATAGTACAAGGATGGATAACTAATGCAAGGGAATGGAAGCTTTA
GCGTTCCCATTTTTCCCTGTTTTTTGT
TGAAGCTGGGCCCCTGTCTCACTTTNTGACCTTNATTCCCCGNATTCTTA
ACATTTCTTTTTTTGTGTGGAAATATAACCTTATGATCTACCTGCTCCTC
CCTTCCTTTATGGTTATGTGTGTTATTTACTTGCTTGATTGACTAATCAG
ACTGAAAATGCACTGTTTAAAAATTGGACCGCCTGTATGCTTGTACCTAT
TGCAATCTACTCAGCCCACGGTTATCATATTAAATTCCTAAACCCGGCCT
TTAAAATCCGTTTCATATAAAAATGATTTNTTTTTCTTCCTTTTTTCCCT
TTTATAAGGGTTTCTTTCCCCCTTCCCCCCTCTTTTCTCTTCCCCTTTTA
GGCGGGGCTACGGGGGGGGGGGGAGGGGGAGAGGAGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGG
GAAGGGGGGGGGGCGGGGGGGGGGGGGGCGGGGGGGGCCTCTCCTCCTCT
CTCCTTCTTTTTTTTCTTCTGTTTTCCCTTTCTTTTCTTTCCCTTTCCTT
CTTTTTTCCATTTTTGTGGGGTTGTCGGGGGGGGGGGGGTAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_e11.b1 MSMg01no433_e11.b1 CHROMAT_FILE:
MSMg01no433_e11.b1 PHD_FILE: MSMg01no433_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:19 2005
         (302 letters)



>mm_chr1_66724323_66725024
          Length = 702

 Score =  584 bits (302), Expect = e-171
 Identities = 302/302 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggacaccacgcatgcttacccgatccactgtggactgcctctttcagaattttcagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aggacaccacgcatgcttacccgatccactgtggactgcctctttcagaattttcagctc 443

                                                                       
Query: 61  gctattgaactctgcaatgagagagctcttgcataaagggcgggggatgaagcgccgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gctattgaactctgcaatgagagagctcttgcataaagggcgggggatgaagcgccgctc 383

                                                                       
Query: 121 cagctggtcggagatgtgttgccgggcagaaagctcctcgtgattttctgctggttgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagctggtcggagatgtgttgccgggcagaaagctcctcgtgattttctgctggttgggc 323

                                                                       
Query: 181 caatagctaaaacgaaggtattgcatattcaggaccccgtttacccatgtatgatgccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caatagctaaaacgaaggtattgcatattcaggaccccgtttacccatgtatgatgccta 263

                                                                       
Query: 241 ctgacgtcatagatacaggaagaacaggaagtaatgcataggaaggggcatggcccacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctgacgtcatagatacaggaagaacaggaagtaatgcataggaaggggcatggcccacac 203

             
Query: 301 aa 302
           ||
Sbjct: 202 aa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)