BAC Information

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BAC

Clone NameMSMg01-433G12
Chromosome1 (Build37)
Map Location 142,041,410 - 142,041,648
singlet/doubletsinglet
Overlap geneCfh
Upstream geneDennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367
Downstream geneKcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433G12.T7 (MSMg01no433_g12.b1)MSMg01-433G12.TJ (MSMg01no433_g12.g1)
ACCAG525196AG525197
length799838
length of high quality
(start - end)
246 (76 - 321)237 (69 - 305)
definitionCHROMAT_FILE: MSMg01no433_g12.b1 PHD_FILE: MSMg01no433_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:29 2005CHROMAT_FILE: MSMg01no433_g12.g1 PHD_FILE: MSMg01no433_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:29 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAACATCCGC
GGAATTCAAGGNCCTTCCATAAACATGATAAAAGCAATCTACAGCAAACC
AGTAGCCAACATGAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAA
AATCAGCGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAAAATA
GTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGG
GATACTAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATA
TGATAGTATATATAAGTGATCTCAATAATTCCACCAGAGAACTCCTAAAC
CTGATAAACAGCTTCGGTGAAGCAGCTGGATATAAAATTAACTCAAACAA
GTCAATGGTCTTTCTCTACACCAAGAATATTCAGGCTGATATATGAATTT
ACCCAAACCACACTCTTTTTCCATAGCCCCAACAAACATTTTTTATCTTG
CCGCGTTTTTCCCCCCCGTAAGTGCTATTATTCGTTCGTTTATAATCTTT
CCATTCCCCCCCCCATTGTATTTCCCCCCTTCCCCCCTCTATTTTGCTCC
CACTCTTCTTTCGTACCGCTTTTCCTTTTACTTTCCCCTCTTTTTTTTTT
GTTTCCCCCTTTTCTTTATATATTTTCCCTACTTTTCTTTCCCCCCCCCC
TCCTTTATCTCTACCTCCACTTCCTCCCCCCCCTCTCCCTACGTTCTCCT
TCCTCCCCCCTTTCCCCTTCCCTTATTTTTTCTCACACCTTGTTTCGCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTATCAGATTGTGTCTAAGAATGAATTGTGA
AGAAAATGTCGAGATTGCTACCTTAATACCTTTCTTTTATAAATTAAAAT
ATTAGATTTATATGAAAAAACATAGACTGAAGAAAGGGTAATGATAGAGA
TTGTCAATTTATAAACTGAACATCCCTTTGAATTCTGCATATAGGCCTGA
GTCATTCACTTCTATGATTTTTTATTTAAACTACAGAATTATTACCATAA
GGGGCAGCTTTTTTTTATAGAGGTCTGCTTGACTGCCTCACATCCCTGAT
TTATCTCCCGCCCTGATCCGTCCATGCTCTTATCATCCTCCCTATCATCG
CTCATTCCACTCATCCTCTGCTTCACTCCGCATGTCATCCCATCTCCACT
CCCTTTACCTCCTCCCCCTCGCTTCCACGCCTCCCTCACTCCTCGCTCTA
CCCTCCGCCCTTTCCATTCCTTCTTCCCCTCCCCTTGCCTCCTCCTCGCC
ACTTTCCTTTTTCCCCTTCTTCTTCTTGTTCCCTTCTATCCCTCCTCTTC
CTTTCCTCTTCCTTTCCCTTTCCTCCGATCTCTCCCTTTTCTCCGCCCTC
CCTTCCCCTTTCTTCTCTTTGTCCCTTTCCCTCTTTCCTCTTCTTTTTCT
TATTCCTCCTCCCCCCTTTTCCTTCCCGTTTCCCCCTTCCCCACCTTTTT
CCCTTTTCCCTATTCCCATTCGTTTCCCACCTTTTTCCCTTTTTCCTCTG
CCCTTACCCCCCCTTTTCCCCTTTTTCCCTTTCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_g12.g1 MSMg01no433_g12.g1 CHROMAT_FILE:
MSMg01no433_g12.g1 PHD_FILE: MSMg01no433_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:29 2005
         (237 letters)



>mm_chr1_142041113_142041751
          Length = 639

 Score =  381 bits (197), Expect = e-110
 Identities = 228/239 (95%), Gaps = 2/239 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtatcagattgtgtctaagaatgaattgtgaagaaaatgtcgagattgctaccttaata 60
           |||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 536 tgtaccagactgtgtcaaagaatgaattgtgaagaaaatgtcgagattgctatcttaata 477

                                                                       
Query: 61  cctttcttttataaattaaaatattagatttatatgaaaaaacatagactgaagaaaggg 120
           |||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct: 476 cctttcttttataaattaaaatattagatttatatggaaaaacatggacagaagaaaggg 417

                                                                       
Query: 121 taatgatagagattgtcaatttataaactgaacatccctttgaattctgcatataggcct 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 taatgatagagactgtcaatttataaactgaacatccctttgaattctgcatataggcct 357

                                                                      
Query: 181 gagtcattcacttctatgatttttt--atttaaactacagaattattaccataaggggc 237
           ||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 356 gagccattcacttctatgattttttttatttaaactacagaattattaccataaggggc 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 639
Length adjustment: 9
Effective length of query: 228
Effective length of database: 630
Effective search space:   143640
Effective search space used:   143640
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)