BAC Information

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BAC

Clone NameMSMg01-433I15
Chromosome1 (Build37)
Map Location 105,751,691 - 105,752,225
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433I15.T7 (MSMg01no433_i15.b1)MSMg01-433I15.TJ (MSMg01no433_i15.g1)
ACCAG525298AG525299
length733734
length of high quality
(start - end)
497 (36 - 532)535 (66 - 600)
definitionCHROMAT_FILE: MSMg01no433_i15.b1 PHD_FILE: MSMg01no433_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:39 2005CHROMAT_FILE: MSMg01no433_i15.g1 PHD_FILE: MSMg01no433_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGT
TTACCTTTCTACCCCATTTTCATTGGATTATTTAGGTTATTGGAGTCTAA
CTTTTTTAGCTCATTGTAAAATTTGGTTATTAGTCCTCTGTTAGTTGGAG
GGTTGGTCAGATCATTTCCCAAACTGCAGACTGTCCATTTGCCCTACTGA
GTGTGGCCTTTGGCTTACAGGAGCTTTTCAGTTTCAACATTCATCAACTG
TTTATTTTAGAGCCTGAGCCATTGGTGTTCTATTCAGGAAATTGTCACTA
GTATTTTTGTGCTCAAGGCTATTTACCACTTTCTCTTCTGTGGGATTTAG
TGCATTCAGTTCTATGTGAAATTTTTTGATGCATTTTATCCACTTGGACT
AAAGCTCTATGCAGGGTGGTTATATTAGTCAGGGTTCTCTAGAGTCACAG
AATTTATGGATAGTCTCTATATAGTAAAGGAATTTATTGATGACTTACAG
TCTGCAGTCCAACTCTTAACAATGTTCAGTAGCAGTTGTGAATGGAAGCC
CAAGAATCTAGCATTTGCTCAGTTTCCCCCCGCAAGCCATGTTAGATAGA
AAAAGATGCTTCCTTCTTCCAATGTCCTTTTGTTTTCTCCCTCACGAGGT
GTTACCCCTATTAAAGGGGTGTATTTACTTCCCCTTCATTCCCAAATACC
CTTGATACCCAAATCCTCCCTGTTTATTTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTAAGAAAAGAAAAGAAATTAAACAGGAGACTTA
AAAATGTTAAGGTAAATTTGTTACACAATTTATTTGAAGCTGTGGGACAT
AAGATAATTGTTTCTAGGAGGAAAGGTCATAGCAAAGAACACACATCAAA
GATCTCAGGATCCAAGTAGATAAGCTGATATTCTACCTTAAGGAACTAGG
AAATCAAGAAAACCAAACTTCAGTGAGTTAGAAAGGTCAGATTAGACATC
AGTAAACCAGTAAATGCTAAAAAATACTTGAAAGCTAATAGGATATAATT
AAATGATTTCATTTTTACTAAATTGTGATATTCACATAAACCTACCTGAA
TTTAAATTTCAAATTTTGATTCTAAAGTAAACTATAGTCTTTTGCATTCA
TTCTAACAATATTGTACTATCCTTCCCACTTATGACTCACAGGAATCTCT
TTTCTAAAACATAATGAAAACAAATAAAATCGACCCTTCAACTTCATGAC
ATTTCAGCAAATCCTGAACTGGAAATCACCTTTAGATCAGATCACGAATG
TTGTGCACTAAAGTCTGTCCATATATGGTTAATAAAGGCTACTTCCTGAC
CGGTATTATTCTGAAATTTTCAAAACCCCTTTCTTGTAGAAAAAGTTCAC
TCCACCCTTGCTTTTCTCGGATAAAAGCGCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_i15.g1 MSMg01no433_i15.g1 CHROMAT_FILE:
MSMg01no433_i15.g1 PHD_FILE: MSMg01no433_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:39 2005
         (535 letters)



>mm_chr1_105751491_105752425
          Length = 935

 Score = 1011 bits (523), Expect = 0.0
 Identities = 532/535 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaagaaaagaaaagaaattaaacaggagacttaaaaatgttaaggtaaatttgttaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaagaaaagaaaagaaattaaacaggagacttaaaaatgttaaggtaaatttgttaca 260

                                                                       
Query: 61  caatttatttgaagctgtgggacataagataattgtttctaggaggaaaggtcatagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatttatttgaagctgtgggacataagataattgtttctaggaggaaaggtcatagcaa 320

                                                                       
Query: 121 agaacacacatcaaagatctcaggatccaagtagataagctgatattctaccttaaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacacacatcaaagatctcaggatccaagtagataagctgatattctaccttaaggaa 380

                                                                       
Query: 181 ctaggaaatcaagaaaaccaaacttcagtgagttagaaaggtcagattagacatcagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaggaaatcaagaaaaccaaacttcagtgagttagaaaggtcagattagacatcagtaa 440

                                                                       
Query: 241 accagtaaatgctaaaaaatacttgaaagctaataggatataattaaatgatttcatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accagtaaatgctaaaaaatacttgaaagctaataggatataattaaatgatttcatttt 500

                                                                       
Query: 301 tactaaattgtgatattcacataaacctacctgaatttaaatttcaaattttgattctaa 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactaaattgtgatattcacatgaacctacctgaatttaaatttcaaattttgattctaa 560

                                                                       
Query: 361 agtaaactatagtcttttgcattcattctaacaatattgtactatccttcccacttatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtaaactatagtcttttgcattcattctaacaatattgtactatccttcccacttatga 620

                                                                       
Query: 421 ctcacaggaatctcttttctaaaacataatgaaaacaaataaaatcgacccttcaacttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcacaggaatctcttttctaaaacataatgaaaacaaataaaatcgacccttcaacttc 680

                                                                  
Query: 481 atgacatttcagcaaatcctgaactggaaatcacctttagatcagatcacgaatg 535
           |||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 681 atgacatttcagcaaatcctgagctggaaatcacctttagatcagatcatgaatg 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)