Query= MSMg01no433_m19.b1 MSMg01no433_m19.b1 CHROMAT_FILE:
MSMg01no433_m19.b1 PHD_FILE: MSMg01no433_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:59 2005
(501 letters)
>mm_chr1_151101082_151101980
Length = 899
Score = 851 bits (440), Expect = 0.0
Identities = 485/506 (95%), Gaps = 11/506 (2%)
Strand = Plus / Plus
Query: 5 gaattcattatcttgcggtctgtgatgcaaatccatccataaaatgaaaaggaacagaaa 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattatctggtggtctgtgatgcaaatccatccataaaatgaaaaggaacagaaa 264
Query: 65 aatatcatctgaggaaattagatcttgaaaatatcaatttccataccgaaattttgaatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatatcatctgaggaaattagatcttgaaaatatcaatttccataccgaaattttgaatc 324
Query: 125 tccagatgcaattaaatatacaaaattcttgataaaaagaaaaatcatgtcatgctgccc 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 325 tccagatgcaattaaatatacaaaattcttgataaaaagaaaaaccatgtcattctgccc 384
Query: 185 cctagtggacgtggacaaaaaaagatggtttgctttacaactggccatgcctgtggcact 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctagtggacgtggacaataaaagatggtttgctttacaactggccatgcctgtggcact 444
Query: 245 gcaatgttcctctcagtttctagagacattgaagcactggccaacaggtaacatacctcg 304
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 445 gcaatgttcctctcagtttctagagacatcgaagcactgaccaacaggtaacatacctcg 504
Query: 305 ttagctatgcaatttttaataaggtctctttagacataaactgtgcaatctcagatattt 364
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 505 ttagctatgcaatttttaataagttctctttagacataaactg--caatctcagatattt 562
Query: 365 ctcttcctattgttctgtttacaatcctaatggtttctttactaaccccaaataacaaaa 424
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctctttctattgttctgtttacaatcctaatggtttctttactaaccccaaataacaaaa 622
Query: 425 aaa---------taacataaccaaattccagaaatactagaataggcataatatacattc 475
||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 623 aaaataaataaataacataaccaaattccagaaatactagaataggtataatatacattc 682
Query: 476 tgcataaccttgatagctaatgaact 501
||||||||||||||||||||||||||
Sbjct: 683 tgcataaccttgatagctaatgaact 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 899
Length adjustment: 10
Effective length of query: 491
Effective length of database: 889
Effective search space: 436499
Effective search space used: 436499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_m19.g1 MSMg01no433_m19.g1 CHROMAT_FILE:
MSMg01no433_m19.g1 PHD_FILE: MSMg01no433_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:00 2005
(478 letters)
>mm_chr1_151223842_151224712
Length = 871
Score = 870 bits (450), Expect = 0.0
Identities = 468/478 (97%), Gaps = 7/478 (1%)
Strand = Plus / Minus
Query: 1 ttctgcaaatgatttttcccatttctattgtgttggatttctttgaaacttattcttttg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 671 ttctgcaaatgatttttcccatttctattgtgttgggtttctttgaaactttttcttttg 612
Query: 61 ctccagtattttagttgctgaaacaattatgcagacattgacttaactaagcacttggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctccagtattttagttgctgaaacaattatgcagacattgacttaactaagcacttggga 552
Query: 121 taatgagaaacattcatttgaaatgcaggtgcacttctctgagtcaaagcctcacattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 taatgagaaacattcatttgaaatgcaggtgcacttctctgagtcaaagcctcacattaa 492
Query: 181 cactcaaaagtattgttcacagaacatgacttgtttttacaatctctggacagagaactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cactcaaaagtattgttcacagaacatgacttgtttttacaatctctggacagagaactc 432
Query: 241 tttccatgtaatcaacaataattttgtgcaagttggaaagacaatagaagttctaagatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tttccatgtaatcaacaataattttgtgcaagttggaaagacaatagaagttctaagatt 372
Query: 301 aatataatgattttaattccaattcatacaacttgaagctccagaataattcatctatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aatataatgattttaattccaattcatacaacttgaagctccagaataattcatctatct 312
Query: 361 ttttactgcccactgaaataaattcttcttttcatgaggtagtttttatttatttagatt 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tttt-------actgaaataaattcttcttttcatgaggtagtttttatttatttagatt 259
Query: 421 acttgtatgtgatattacaaaataataaatattataatgagaaaaatgttttgttaat 478
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 actggtatgtgatattacaaaataataaatattataatgagaaaaatgttttgttaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 871
Length adjustment: 10
Effective length of query: 468
Effective length of database: 861
Effective search space: 402948
Effective search space used: 402948
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
