BAC Information

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BAC

Clone NameMSMg01-433O14
Chromosome1 (Build37)
Map Location 80,859,046 - 80,859,289
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10
Downstream geneLOC665092, 9430031J16Rik, EG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433O14.T7 (MSMg01no433_o14.b1)MSMg01-433O14.TJ (MSMg01no433_o14.g1)
ACCAG525583AG525584
length755760
length of high quality
(start - end)
244 (75 - 318)418 (66 - 483)
definitionCHROMAT_FILE: MSMg01no433_o14.b1 PHD_FILE: MSMg01no433_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:08 2005CHROMAT_FILE: MSMg01no433_o14.g1 PHD_FILE: MSMg01no433_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGATCCGCGG
AATTCAGATAGTTATCCTTTTACTCAGTGGGCAAACTCAGTAAGCATAAA
CCTATGAGGACCCAAGAAGTTCAGAGTCAGAGCCCATGGCCTGAAACTCA
ACAACTGAGAAATGCACAGGCTCACCCAGTGACCTGTATGAGATATATCA
GTCATTTCGGGGCTTTAAACTTTACTCATCTCATAGCTCACTCGATTTAT
TTCTAAGACGATAAAGCTATACCTTTACCCTATCTGATCACCTAAGAAGG
ATGACAATTTGGTCACAATTTTTTTTACATTTAACATGAAACAATACTTG
GCTTTACTCATGACCACCTCAGCAAACAGAAAAACTTACAAAACTATGGC
TTGATGGAAGCAAGCTGAAAATACCTGACGAATTTACTAAGCTCTTTTGA
GTGTTTATTCTTCAGGCAAATGAGGGAGAATAGCCTCCATTCCCTTAGCA
CCACGGACTTCGTTTTATATATAAACAGGCTAGTGCATTTCACCCCATCT
TTTTTTACCTGCCCCCCCTATTTTCCCCCACCCCTTATTCTCCCCCACTT
CTTTCTCATACCCTCTTTTTTTTTTTTTCCCCCTTTTTTTATCTATCCCG
CCTTTTTTTCCCCCCCTTCTTTCCCCTTGGCCCCTTCCATCTCTCCCTCC
CTTCCTTCTCTTCTTCCCCCTTTCCACTTCCTTTTTTGTCTCCCCCTTTT
TCCTC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACTT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGC
GGTTCCTCTTTATAACTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCTAGATGCCCCTCATCAGAGGGATGGATACAGAATATGTGGCACAT
CTACCCTATGTAGTACTACTCAGCTATTACCAAGAATGATCTTATGAAAT
TCCTACCCCAATGTATGGACCTGTAGCGCATCATACCTGATTGGGGCTAC
CTTTCCCTCAACAAACTCATCCCCTATGTTCTTTCTTTATTATTGGGCAC
TTACCCTCTCATCCAGTGTCCCCCCACATTTTTCATATTCTTTTTTCTAT
CCATTCTACCTTTTCCGTTATCCTTTCCATTTCCCCCTTTTTCCCCTTTT
CTTTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_o14.b1 MSMg01no433_o14.b1 CHROMAT_FILE:
MSMg01no433_o14.b1 PHD_FILE: MSMg01no433_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:08 2005
         (244 letters)



>mm_chr1_80858846_80859489
          Length = 644

 Score =  426 bits (220), Expect = e-124
 Identities = 238/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgggcaaactcagtaagcataaacctatgaggacccaagaagttcagagtcagagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 cagtgggcaaactcagtaagcataaacctatgaggacccaagaagttcagattcagagcc 385

                                                                       
Query: 61  catggcctgaaactcaacaactgagaaatgcacaggctcacccagtgacctgtatgagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 catggcctgaaactcaacaactgagaaatgcacaggctcacccagtgtcctgtatgagat 325

                                                                       
Query: 121 atatcagtcatttcggggctttaaactttactcatctcatagctcactcgatttatttct 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 324 atatcagtcatttcggggctttaaactttactcatctcgtagctcactcgatttatttca 265

                                                                       
Query: 181 aagacgataaagctatacctttaccctatctgatcacctaagaaggatgacaatttggtc 240
           ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 aagacaataaagctatacctttaccctacctgatcacctaagaaggatgacaatttggtc 205

               
Query: 241 acaa 244
           ||||
Sbjct: 204 acaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)