Query= MSMg01no433_p04.b1 MSMg01no433_p04.b1 CHROMAT_FILE:
MSMg01no433_p04.b1 PHD_FILE: MSMg01no433_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:12 2005
(397 letters)
>mm_chr1_150874829_150875625
Length = 797
Score = 714 bits (369), Expect = 0.0
Identities = 387/393 (98%)
Strand = Plus / Minus
Query: 5 gaattcataaggtgcccaaggaactgaaagaagacagagctatggatgtaggcttcagca 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gaattcataaggtggtcaaggaactgaaagaagacagagctatggatgtaggcttcagca 655
Query: 65 gagctcctgcctaaaaatttccaggctctgggttcaattctcagaattaaaaacaaacaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gagctcctgcctaaaaatttccaggctctgggttcaattctcagaattaaaaacaaacaa 595
Query: 125 acaacagtcaacatataaggactccagatgaaaccttaatgtaaggcaaagatagatcct 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 594 acaacagtcaacatataaggactccagacgaaaccttaatgtaaggcaaagatagatcct 535
Query: 185 aaggtaatttaattaaaaacataaatactttcatcgtttcctgttactttattttctcag 244
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 534 aaggtaatttaagtaaaaacataaatactttcatcgtttcctgttactttattttttcag 475
Query: 245 agtttaggagcataaaattgaaaatgtatggatagaataatggtgacaaactaatgaagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 agtttaggagcataaaattgaaaatgtatggatagaataatggtgacaaactaatgaagc 415
Query: 305 tcttgccttacttgaaggaaaaggaagtaagcaagtgtgtagaactgactttagtaggag 364
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 414 tcttgccttacttgaaggaaaaggaagtaggcaagtgtgtagaactgactttagtaggag 355
Query: 365 agggaaggccttctagaactggtgaagctggtg 397
|||||||||||||||||||||||||||||||||
Sbjct: 354 agggaaggccttctagaactggtgaagctggtg 322
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_p04.g1 MSMg01no433_p04.g1 CHROMAT_FILE:
MSMg01no433_p04.g1 PHD_FILE: MSMg01no433_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:12 2005
(470 letters)
>mm_chr1_150766194_150767061
Length = 868
Score = 866 bits (448), Expect = 0.0
Identities = 464/470 (98%), Gaps = 2/470 (0%)
Strand = Plus / Plus
Query: 1 tctaaagggctgctgtgcctgagatgacttgcagcagagactggctgcttatttatcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaaagggctgctgtgcctgagatgacttgcagcagagactggctgcttatttatcaaa 260
Query: 61 gtcattttccttttctcttcctggaaaggctattacacaactgaactacattcccagctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcattttccttttctcttcctggaaaggctattacacaactgaactacattcccagctc 320
Query: 121 tctctgacatgtgagtatggcaaggcggttgtgtagtagcttgcagaatgaacatggacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctgacatgtgagtatggcaaggcggttgtgtagtagcttgcagaatgaacatggacg 380
Query: 181 aagggtccccacttaaacttagcaggtgacaatgtcctatgtgatgcattccagccttct 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagggttcccacttaaacttagcaggtgacaatgtcctatgtgatgcattccagccttct 440
Query: 241 cctatttctgataagatacagaagccccagaagacaacactagtttatagcatccagaag 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 cctatttctgataagatacagaagccccagaagacaacgctagtttatagcatccagaag 500
Query: 301 aactacacattgggaggatacatgaatccttgtcctttgcatggtagttcacattaaaaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 aactacacattgggaggatacatgaatccttgtcctttgcatggtagttcacat--aaaa 558
Query: 361 aaatatagtggatgtagctcaaaataagcttttattatatagcaagaattttggttactt 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaatatagtgcatgtagctcaaaataagcttttattatatagcaagaattttggttactt 618
Query: 421 tgaaaaacacagaaatattattggaatatgttttcctcttaatcccaggc 470
||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 619 tgaaaaacacagaaatattattgtaatatgttttcctcttaatcccaggc 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 868
Length adjustment: 10
Effective length of query: 460
Effective length of database: 858
Effective search space: 394680
Effective search space used: 394680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
