BAC Information

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BAC

Clone NameMSMg01-434F14
Chromosome1 (Build37)
Map Location 79,932,868 - 79,933,114
singlet/doubletsinglet
Overlap geneEG433326
Upstream geneEG545332, Scg2, Ap1s3, Wdfy1, Mrpl44, Serpine2
Downstream geneLOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434F14.T7 (MSMg01no434_f14.b1)MSMg01-434F14.TJ (MSMg01no434_f14.g1)
ACCAG525915AG525916
length734743
length of high quality
(start - end)
537 (66 - 602)247 (68 - 314)
definitionCHROMAT_FILE: MSMg01no434_f14.b1 PHD_FILE: MSMg01no434_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:44 2005CHROMAT_FILE: MSMg01no434_f14.g1 PHD_FILE: MSMg01no434_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
ATTCTGCTCTTTGAGCTTGCACAGCAAATGCTGTTAGGCACTGAGCACTA
CAGAGTAAGTGGTCCTTGTGCACACAGAGAAGCACTGGAGAAGCCAGGAA
AGTTAAACATGTGGATGCAGGCTTCTCTCTTCAAAGAAAGAAGAGGTTTG
CCTACCTTCCTCCCAGAACACTGGGGAAGGATGTAGTTTACAACCTGGTG
ACCCTTTGCCATTGTAGGGCCAGGCTTCAGCTGTATCCCCCAGAATATTA
CTTGTTTATTCTAGATTCTGCCCCACCTAAATCTTAAGCATTGCTTCTCA
GTCCATATTACCCAGCCTTATGCGAGATGTCACTTGCACTTATAACAGGC
TAAGCAACGTTTATGTATGTATCTTAGGGCCACGCCAACCCTGACTCCTA
TAGGCAAATGTTCACCTCAGTCATTAACGCTAGGCCTGGGGCTTGGGGAG
ATGGCTCAGAGGTTAAGCACACTGACTGCTCTTCCGAAGGTCCTGAGTTC
AATTCCCAGCAACCACAACCAACTGTAATGAGATCTGATGCTCTCTTCTG
GTGTGTCTGAAGTCAGCTACAGTGTGCTTATGTATAAAAATAACCTAAAT
CTTTGGTCTGTAATGGACAGGGACTGAGCCAGGGGGTGTTGACAGAGCAA
GGCACTTCCAACCATCCCTTGGATGTTGACAACN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAGAAATAAAAGATATGGCCTTGTGTGGGACTG
TTTGCAGTTTGGTTGTATCTGACCCAAGCTTTCCTTTATTGATGTGTTAC
AGGGAGGACACCCCTTTGGGGATGAATCACATCCTGCTTTGGTAATGTGA
TAGGATGTTTTAAAGAGCACATGGACCATTGCTGAATTTGGCTAGAAATG
ACTATACTCTTTATTGCTCTTTCAACTTGAGCAAGTTAGTTGTGTTGGGA
TAAGAGCTCTGTGGTTGTGTGGTCAGAGACATGAAAGAAATGGGTGAGGT
GAGGTTTCCATGAACAGTGGTTTTGCGATTCTACCGGGCTAATGACTATG
GATTACTGACCCCTGCTCTTATCTGGACTCTCTGGACAGCATCACCGATC
TTCTCGTTCTTTTCCATTGTTCCTTCCCTCGCCTTCTTTACTTCTCTTCC
GCCTCCTATCTCCTTCTCTTCCCTCCCTTTTCCATCTTTTATTCCCTTGT
CCTTTTCTTTCCTTTTTCTTCTCTCCTTCCTTTCTTCCATCTTCCTCTTT
TATTATTGCCCTCGCGTTCTCTTCCATTTTTCTCTCTACCTCATTCGTTC
TCTTTCTTTTTTCATATGGTCTCCCTTTTATCCTGCTAATCTTCTCTCTC
CTCTAGCCACATTCTTCTTATTCTATCTTTCGTCCTTCTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_f14.g1 MSMg01no434_f14.g1 CHROMAT_FILE:
MSMg01no434_f14.g1 PHD_FILE: MSMg01no434_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:44 2005
         (247 letters)



>mm_chr1_79932668_79933314
          Length = 647

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaataaaagatatggccttgtgtgggactgtttgcagtttggttgtatctgacccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaataaaagatatggccttgtgtgggactgtttgcagtttggttgtatctgacccaa 260

                                                                       
Query: 61  gctttcctttattgatgtgttacagggaggacacccctttggggatgaatcacatcctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttcctttattgatgtgttacagggaggacacccctttggggatgaatcacatcctgc 320

                                                                       
Query: 121 tttggtaatgtgataggatgttttaaagagcacatggaccattgctgaatttggctagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttggtaatgtgataggatgttttaaagagcacatggaccattgctgaatttggctagaa 380

                                                                       
Query: 181 atgactatactctttattgctctttcaacttgagcaagttagttgtgttgggataagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgactatactctttattgctctttcaacttgagcaagttagttgtgttgggataagagc 440

                  
Query: 241 tctgtgg 247
           |||||||
Sbjct: 441 tctgtgg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)