XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTA
TACTTTTCCAAGAATAGACCAAAAGGAGCTGGAGAGATGGCTCAGTGGGT
AAGAGTGTTGGCTGCTCCTCCAGAGAACCCAGGTTCAATTTTTAGCCCCC
AGTTCTCAGCTCACAACTTGTCTGTTGCATCATGAATTTATAGTATTCCT
TTCTCTTTTGCTACCTTGATGAAGAATTTCATTTGCATGAACTTTTTAGG
ACTCTTTTAAAGTCAGAAAATGCTGAGAGGCCAGATTTACTTTATTGTTA
AAATATCTCCTTGCCTTATCGTTTTTTAAAAACACTTTTAGCATTTAATG
AAACCACAAAATAATACCAGGGTTCTTTTGGGCAAGTATGCTTATAATTT
TATAGAAATCACTCTTAATTTCCCGTTATTACACTCCATATTAATATATA
AACATCCCAGTATTACTTGTCAGCACACACAGCTTCAAATGTTAATGTAA
AGACTGCTGTTGAGTGATGGATCCAAGAGCAGTGCTGCCTCAATTTATAT
ATCTGTGGTCCATAGCTTAGAACTATGTATACTTGGCCACTTTGCCAATA
AGGATGAGAAAATGACATTACCAAGCTAAATGATTGAATATAAGTTTGCA
TACAATGCTTGCCTTGACATTTTAAAAGTAAATGGAACCCTTCATTCACA
AAGGGTAAAAGACATTCCN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGTGGGTGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAACTGTTTATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCGGAAGATGCCCCAACCGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCATAAGCTGGA
AAGAACCTAGATGCCCCTCAACAGAAGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATAAN
ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CACATTCCAAAGAAACTCACACAATATGTACTCACTGATAAGTGGATATT
AACCCCCAAACCTATGATACTCAAGAAATAAGAAATAATTTGCTAAACAC
CTGAAACTCCCCAAAAAATGGAGAATGGAGG

Query= MSMg01no434_l13.b1 MSMg01no434_l13.b1 CHROMAT_FILE:
MSMg01no434_l13.b1 PHD_FILE: MSMg01no434_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:13 2005
         (617 letters)



>mm_chr1_66268684_66269700
          Length = 1017

 Score = 1147 bits (593), Expect = 0.0
 Identities = 609/615 (99%), Gaps = 3/615 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatacttttccaag--aatagaccaaaaggagctggagagatggctcagtggg 62
           ||||||||||||||||  |||   ||||||||||||||||||||||||||||||||||||
Sbjct: 952 gaattcttatactttt-taaggttatagaccaaaaggagctggagagatggctcagtggg 894

                                                                       
Query: 63  taagagtgttggctgctcctccagagaacccaggttcaatttttagcccccagttctcag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 taagagtgttggctgctcctccagagaacccaggttcaatttttagcccccagttctcag 834

                                                                       
Query: 123 ctcacaacttgtctgttgcatcatgaatttatagtattcctttctcttttgctaccttga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 ctcacaacttgtctgttgcatcatgaatttatagtattcctttctcttttgctaccttga 774

                                                                       
Query: 183 tgaagaatttcatttgcatgaactttttaggactcttttaaagtcagaaaatgctgagag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tgaagaatttcatttgcatgaactttttaggactcttttaaagtcagaaaatgctgagag 714

                                                                       
Query: 243 gccagatttactttattgttaaaatatctccttgccttatcgttttttaaaaacactttt 302
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 713 gccagatttactttattgttaaaatatctccttgccttaacgttttttaaaaacactttt 654

                                                                       
Query: 303 agcatttaatgaaaccacaaaataataccagggttcttttgggcaagtatgcttataatt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 agcatttaatgaaaccacaaaataataccagggttcttttgggcaagtatgcttataatt 594

                                                                       
Query: 363 ttatagaaatcactcttaatttcccgttattacactccatattaatatataaacatccca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ttatagaaatcactcttaatttcccgttattacactccatattaatatataaacatccca 534

                                                                       
Query: 423 gtattacttgtcagcacacacagcttcaaatgttaatgtaaagactgctgttgagtgatg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gtattacttgtcagcacacacagcttcaaatgttaatgtaaagactgctgttgagtgatg 474

                                                                       
Query: 483 gatccaagagcagtgctgcctcaatttatatatctgtggtccatagcttagaactatgta 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gatccaagagcagtgctgcctcaatttatatatctgtggtccatagcttagaactatgta 414

                                                                       
Query: 543 tacttggccactttgccaataaggatgagaaaatgacattaccaagctaaatgattgaat 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tacttggccactttgccaataaggatgagaaaatgacattaccaagctaaatgattgaat 354

                          
Query: 603 ataagtttgcataca 617
           |||||||||||||||
Sbjct: 353 ataagtttgcataca 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)