BAC Information

Click to search

BAC

Clone NameMSMg01-434P02
Chromosome1 (Build37)
Map Location 176,911,722 - 176,912,117
singlet/doubletsinglet
Overlap genenone
Upstream geneIfi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
Downstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434P02.T7 (MSMg01no434_p02.b1)MSMg01-434P02.TJ (MSMg01no434_p02.g1)
ACCAG526362AG526363
length759833
length of high quality
(start - end)
396 (64 - 459)70 (67 - 136)
definitionCHROMAT_FILE: MSMg01no434_p02.b1 PHD_FILE: MSMg01no434_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:30 2005CHROMAT_FILE: MSMg01no434_p02.g1 PHD_FILE: MSMg01no434_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCCGCTAAACGACTCCTATTTCCAGAGGATCCGCGGAATTCTCTA
ATATTCCGAATTCTGGATGTGATTCCAGATCTTTCACAATTTCCTGAACT
GACAGGTCATATGTATAAGGAGAACAGAATGTTCTCTATGTTATAGAAGA
CAGAAAGTGCTTAGTAGAATAAGAAAAAAACCATGGCCCCACAAGGACTT
ACCACAGAAACAATGAAAGAAGCTTTTATCATATGCAATGGAGCTGACCA
TCAATCTAATCTGTAATAAATAAAATGACGTTACAATGTGTTTTCAATAA
TTTGTCAGGTCCCTATCCTTGGTGAATGCGATGAAAACCAGCTACAGTTC
CTTGTCTTCCCATTTCTTGGCAACAAATCTACTAGCTTGAAGTTCATAGT
CAAAAGACCACACATGTGATCATACTTCTATGACACCAGAAGCTAAAGGA
AAAGTGGTATGATGGGGATTATCAGTGCTTTGTCCAGACTGCAAAAGGCC
ATTTGTCACTTATTACATGTCATGTTCTGTTCCCATAATTTCCTTTTACC
CAACTAGTCTACAACTCCCACTCTTTCTAGATTAATATTATCTTCATCTC
AATCCAAGAACATATTGTACCTCCCTAATGAACTTGTTTGTTCTTCATTT
ACTTTTCCTCTTCCTTGATTTACCTTCAATGCTTCCACCAGTCTCCCTCT
TTCCGCTCCCTGCTCCCCCATATCCCCTGCAATCCCTTTCTTTCTTTTTC
TTATACAAT
CTGTTACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCTGTGTAGAGTAACAAGCCTAAACTCTGAAA
CTGTGTCTATGCCCAGCAAAGAATGGAGTGGTAAGGACGGCGGTCACTGG
AAAGCTGANNCCGTTCTCCCCTTTCCCTGCCTCCTTCCCGTCTCTTCTTA
CCCTCCCCCTCGCCCTCCTCCTCTCTTCTTGTTCTCCCTTCCTCTTCCCC
CCCTATCTCTTTTCTCCCCCCCCTCCCCCCTCTCCTCCTTCTCCCCCCTC
TTCCCCCCTCCTCTCCCTTTCCCCCCCCCTCCTCCCCCCCCTTCCTCTCC
CCCCCTCCCCCCCCCCCCCCCCCCTCTTCCTCCCCCCCCCCCCTCCCCCT
CTTCCCCTTCCCCCCTCCCCCCCCCCCCCCTCCCCTCCCCCCCTTCCTCT
CACCTCCTCTTCCCTCCCCTTCTTCCCCTTCCCTCCCTCTTTCCTTCTCT
CTTCTTCTCTCTCCTCTCTTCCCACCTCCTCCCCCCCCCCCCCCCTTCCT
CTTCCCCCCCCCCCCTCTCTCCTTTCTCTCTTTCTCCCCTCTCCCTCCTC
CCTCTTCCCTCCCTCCCTTTCTCTTTCCTTCCCCCCTCCTCCCCTCCACT
CCCCTTTCCCCCCCCTCCTCCTCTCTCCCTTCCTCTTCCTCTCTCTCCTC
CCCCTCCTCCCCTCTCTCCTCCCTTTCCTTCCCTCCCTCTCCCCTCTCCC
CCCCCCCCCCCTCCCTCCTTCCTTCCCTCCCTCCCCCTTCCCCTCTCCTT
CCCTTCTCCTCTCTCCTTCATCTCCCCCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_p02.b1 MSMg01no434_p02.b1 CHROMAT_FILE:
MSMg01no434_p02.b1 PHD_FILE: MSMg01no434_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:30 2005
         (396 letters)



>mm_chr1_176911522_176912317
          Length = 796

 Score =  750 bits (388), Expect = 0.0
 Identities = 394/396 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggatgtgattccagatctttcacaatttcctgaactgacaggtcatatgtataaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tggatgtgattccagatctttcacaatttcctgaactgacaggtcatatgtataaggaga 537

                                                                       
Query: 61  acagaatgttctctatgttatagaagacagaaagtgcttagtagaataagaaaaaaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 acagaatgttctctatgttatagaagacagaaagtgcttagtagaataagaaaaaaacca 477

                                                                       
Query: 121 tggccccacaaggacttaccacagaaacaatgaaagaagcttttatcatatgcaatggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tggccccacaaggacttaccacagaaacaatgaaagaagcttttatcatatgcaatggag 417

                                                                       
Query: 181 ctgaccatcaatctaatctgtaataaataaaatgacgttacaatgtgttttcaataattt 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 416 ctgaccatcaatctaatctgtaataaataaaatgacattacaatgtgttttcaataattt 357

                                                                       
Query: 241 gtcaggtccctatccttggtgaatgcgatgaaaaccagctacagttccttgtcttcccat 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 356 gtcaggtccctatccttggtgaatgcaatgaaaaccagctacagttccttgtcttcccat 297

                                                                       
Query: 301 ttcttggcaacaaatctactagcttgaagttcatagtcaaaagaccacacatgtgatcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttcttggcaacaaatctactagcttgaagttcatagtcaaaagaccacacatgtgatcat 237

                                               
Query: 361 acttctatgacaccagaagctaaaggaaaagtggta 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 acttctatgacaccagaagctaaaggaaaagtggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)