BAC Information

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BAC

Clone NameMSMg01-435E21
Chromosome1 (Build37)
Map Location 31,890,583 - 31,890,735
singlet/doubletsinglet
Overlap genenone
Upstream genePhf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
Downstream geneLOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435E21.T7 (MSMg01no435_e21.b1)MSMg01-435E21.TJ (MSMg01no435_e21.g1)
ACCAG526640AG526641
length807822
length of high quality
(start - end)		437 (41 - 477)153 (71 - 223)
definitionCHROMAT_FILE: MSMg01no435_e21.b1 PHD_FILE: MSMg01no435_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:59 2005CHROMAT_FILE: MSMg01no435_e21.g1 PHD_FILE: MSMg01no435_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCCACCTGGGGATCCATCCCATATAGAGAAACCAAACCCAGACACTATTG
TGGATGCCAAGACGTGCTTGCTCACAGGAGCCTGAGATAGCTATCTCATG
AAAGGCTCTGCCAAGAGTCTAACAAATACAGAGGCAGATGCTCACAGCCA
ACTATTGGACTGAGCATGGGATTCCCCAATGGAGAAGTTAAAAAGACTGA
AGGAGCTGAAGGGGTTTGCAACCCCATAAGAAGAACAACAATATGAACCA
ACCAGTATCACCAGAGCTCCCAGGGACTAATCCTCCAACCAAAGAGTATG
CATGGCTCCAGCTGCATATGTAGCAGAGGATGGCCTTGTAGGACATCAGT
CTGAGGAGAGGCCCTTTGTCCTGTGAAGGCTTGATGCCCCAATGTAGGGG
AATGCCAGAGTAGGGAAGCAGGAGTGGGTGGTTGGGGNNACATCCTCTTT
NNANCTTGCGNACGGGAGCATGTTACTNNAAATTCCTTTCCCTTTTCCCC
CCTTCCTTTCNACTTCCTCTCCTTTTTCTCCCTTTTTTCTTCCATTCCTT
TTCTCGCCCCATTTCTTTTCCCGNCTTTCACTTCCCTTCTCTCCCCCTTC
TCTACCTTTTTTTTCTTCCCCTTCTACCTTCCCCACCCTTTTTCTCTTTC
CCCTCCTTTCCCCTCCTTTTCTTTTTCTTTCCTTTTCCCCTTTCTTTTCT
TCCCTTTTCTTCCCTCTTCCCCCTTTTTCCCCTTTCCCATTTTCCCCCTT
TACCCCG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGACTTCCTTGTCTTTCTGTGAAGGGAAGA
GATTTTTGCTTTTTCACAATTTTGACAAAAATCCAACACTCAAAGAAAAC
CCTTTCTTCTGCAAGAGGCATCATGTATTCTTGTGCGTGTGTGTGTGTGT
GTGTGTGTGTGTTTGTGTGTGNCCCCCNNCNCCCCCCCCCCCCCCCTTTT
TTTTTTTCCCCTTTCCTCCCCCTTCCTTTTTTTTCCCCCCCTTTTTCTTT
TCTTCTTTNTTCTTTTTTTCCTTTTNTTTTCTCCCCCCCCCCCCTTTTTT
CTCCTTTTCTTTTTTTTTCCTTCCCCCTCTTTTTCTTTTTCTTTCTTCCC
CCCCCCCCCCTTTTTCCTTTTTTCCTCTTTTTNTTTCCCCCTCCTCTCTT
CCTCATTCCTTTCTCCCCCCCTTTTTTTCCCCTCCTCCCTCCCCTCTTTT
CCCTCTTCTTTTCTTTTTTCCCCTTTTTTTTCTCTTTTCCCCTCTTTTCT
TTTTTCTCTTCTCCCCTTCTTTTTCCCTTTTTTTTCTCCCCCTTTTTTCT
TTTCCTTTTTCCTCCTCCTTTTTTTTTTTTTCTTCCCCCCCCTCCTCCTT
TTTTTTTTTTTCTTTTTCCTTTTTTCCCCTTTTTTATTTTCCTTTTTTTT
TTTTTCTTCTTTTTCNCTTTCCTTTNTTTCCTCTCTCTCTTTTCCCTTTC
TTTATTTATTTATTTTCCCCTCCCCCCCTTTTTTTTTTATTCTCACTCCA
CTCCCATTATATTTTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_e21.g1 MSMg01no435_e21.g1 CHROMAT_FILE:
MSMg01no435_e21.g1 PHD_FILE: MSMg01no435_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:59 2005
         (153 letters)



>mm_chr1_31890383_31890935
          Length = 553

 Score =  269 bits (139), Expect = 6e-77
 Identities = 149/153 (97%), Gaps = 2/153 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacttccttgtctttctgtgaagggaagagatttttgctttttcacaattttgacaaaa 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 agacttccttgtctttctgtgaagggaatagatttttgctttttcacaattttgacaaaa 260

                                                                       
Query: 61  atccaacactcaaagaaaaccctttcttctgcaagaggcatcatgtattcttgtgcgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccaacactcaaagaaaaccctttcttctgcaagaggcatcatgtattcttgtgcgtgt 320

                                            
Query: 121 gtgtgtgtgtgt--gtgtgtgtgtttgtgtgtg 151
           ||||||||||||  |||||||||| ||||||||
Sbjct: 321 gtgtgtgtgtgtttgtgtgtgtgtatgtgtgtg 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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