CTCTCTTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTAAATATGATTTCAGTGGCTTGAGATATAATGTAAACAATG
AAGATGTGGAAACTCACAAAATAAAAATGCCTCTTTTCTGCAAATGAAAA
TCATGATAGAATGACCCGATAAAATACTAAGTGGAAAAAAATCTTCTCAA
ATATATATGACCAACGAAGATTATATAAAAAGAACAAAACAATCCTAAAG
AAGGCAATGAAACCCACTTAACAGATGGTCTAGGAAGCTATACTGAGAAT
TCTCTAAAACAAAACTAGACCTAATTCCCATCCTCATCTCAAGCATGATA
GCAAACGGAGGTTTTTTTTCTTCCCTGTCTCTACAGATTCCTAGATGCCA
TGTCCTTCAACAAAAGAATGAATAAGAGATATGTGGTACATTTACACAAT
GGAGTGTGCCTCACCTCTTAAAAGTAATGACATCATGGAATTTGCAAGCA
ATTGGATGACACTAGAGGACCATCATTCTTATTGAGGTATCCAAGATCCC
GAATGATAAATATTAGATATATTTACTTATATGCAGAGATTCCTTCTTGA
GTAAACTTATAACCAACTACGGTCCTTTATAACCTGGAATGGTCTTTTTT
GTAACGGATTCTAACTTCAATCATACAACCCTTATTTCTCTTTTTTTTAC
CGTTAATTTCGCATAAAAGTACCCTCCCTTTTCTCTCTTATTTTTCCCCT
TTTTTTCCCCTTTTATCCTTCG

NGGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTAC
CATCATCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGT
TAGGGTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGT
GAGTGGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCAT
CTGGCAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGT
TCCTCTGTTGATTTTGTTACCCTCTATTAGCAGGCGTGGGAGACAAGCTC
TCTTCTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCT
CTCTCAGGGAAGGTGCACAGCTATCTGGTGTTTGGACTTCCTCCTGGCTG
ATCGTGATGGCTTTATTTATGATCTCTTCTTTTAAACCGTGTTGGCTTTG
CCTATTTTTTTGTTTCATCTTTTCGCAATTTTTATTTCTCATTTTTTCAA
TTTTTGTTTTTTTTTTTTTTTTACATCTTTTTTTCCTCACCCCTTTTTTA
TGCTCCTTCTTCTTTCCCCCCTCCCCCTTTTTTTTTCTCCTCTTTCTTTT
CTTATTCCTTTTTTTTTATATTTCTTTTCTTGTTCATTTTTTTTCTTGGT
TTCTTTTCCTTACTTTTGCTATCTTTTTCCTCTTTTTTCCCCTTTTCTCT
TCTTTAG

Query= MSMg01no435_o08.b1 MSMg01no435_o08.b1 CHROMAT_FILE:
MSMg01no435_o08.b1 PHD_FILE: MSMg01no435_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:48 2005
         (458 letters)



>mm_chr1_100344425_100345281
          Length = 857

 Score =  832 bits (430), Expect = 0.0
 Identities = 448/454 (98%), Gaps = 1/454 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaatatgatttcagtggcttgagatataatgtaaacaatgaagatgtggaaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gaattctaaatatgatttcagtggcttgagatataatgtaaacaatgaagatgtggaaac 490

                                                                       
Query: 65  tcacaaaataaaaatgcctcttttctgcaaatgaaaatcatgatagaatgacccgataaa 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcaaaaaataaaaatgcctcttttctgcaaatgaaaatcatgatagaatgacccgataaa 430

                                                                       
Query: 125 atactaagtggaaaaaaatcttctcaaatatatatgaccaacgaagattatataaaaaga 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 429 atactaagtggaaaaaaatcttctcaaatatatatgaccaacggagattatataaaaaga 370

                                                                       
Query: 185 acaaaacaatcctaaagaaggcaatgaaacccacttaacagatggtctaggaagctatac 244
           |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acaaaacaattctaaagacggcaatgaaacccacttaacagatggtctaggaagctatac 310

                                                                       
Query: 245 tgagaattctctaaaacaaaactagacctaattcccatcctcatctcaagcatgatagca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgagaattctctaaaacaaaactagacctaattcccatcctcatctcaagcatgatagca 250

                                                                       
Query: 305 aacggaggttttttttcttccctgtctctacagattcctagatgccatgtccttcaacaa 364
           |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aacggagg-tttttttcttcactgtctctacagattcctagatgccatgtccttcaacaa 191

                                                                       
Query: 365 aagaatgaataagagatatgtggtacatttacacaatggagtgtgcctcacctcttaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 aagaatgaataagagatatgtggtacatttacacaatggagtgtgcctcacctcttaaaa 131

                                             
Query: 425 gtaatgacatcatggaatttgcaagcaattggat 458
           ||||||||||||||||||||||||||||||||||
Sbjct: 130 gtaatgacatcatggaatttgcaagcaattggat 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 857
Length adjustment: 10
Effective length of query: 448
Effective length of database: 847
Effective search space:   379456
Effective search space used:   379456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)