BAC Information

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BAC

Clone NameMSMg01-436I19
Chromosome1 (Build37)
Map Location 154,741,852 - 154,742,415
singlet/doubletsinglet
Overlap geneSmg7
Upstream gene1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2
Downstream geneEG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436I19.T7 (MSMg01no436_i19.b1)MSMg01-436I19.TJ (MSMg01no436_i19.g1)
ACCAG527589AG527590
length7451,265
length of high quality
(start - end)
563 (73 - 635)---
definitionCHROMAT_FILE: MSMg01no436_i19.b1 PHD_FILE: MSMg01no436_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:39 2005CHROMAT_FILE: MSMg01no436_i19.g1 PHD_FILE: MSMg01no436_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTATAATTGCGGCGCTATACGACTCCTATATTCAGAGGACCGCGGATT
CAGAGGGATTCCAGAATGAAACAGGCTTTTNAAAAGGAGATTGTTGTGCA
CGCCTTTGATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTT
CGAGGCCAGCCTGGTCAACAAAGTGAGTTCCAGAACAGCCAAGGCTATAC
AGAGGAAAAAAGAAAAAAAAAGGAGATTGTTTCACAGGAAACACTAGTAA
AGAAAATAACAGCACAAATGAAATAGGTCATGGTATAGTCAAGAGCACAA
GGAAAAGATGAGGCTCTCTGACAAGCCCTACCTAACAGCTTTTCCCTTTT
TAAGACCCATACCAGCTACCAAATGTTCAAATTGCCATTTTCACACCTCT
GCTTCTCCTATCTGTGAGAAACATGTGCCTGGTCAGAACATTTAATATTA
TGCATTACATCAGGGCAGATACAATTTTTAAAAAGGTATTTGAAAAAAAG
ATGTATAAGCAAGCTCAGCCTGTTTGTACAATATGAATGTGCTCAATTCC
CTCCCCCTTAAAACTCCCACTCATCTTTCAATATTTACGTGAAATCTCAT
CTCCACCAAGATGCCCTCATCACCCATCTCCACCTACTGTACTAAGCAGC
ATCCCTACATCCACACATTACCTTTGCTTCTCTATTACAGCATGTAGTAA
GTTGGCCGGCTACTCATGTGTCCCCAGGAACTTTAAACTTGCTGC
TCTATTGTTATGTGGAGTAGGCCCTGGCTGGCCGACATTGTTCTTCCCAA
AATATTAGGTAGACACCTATAGTAATGGTTTCCCGCCGGAATTTCTCCTT
TGATCCTGTGAAGATGTGTGATGTAATGGAGCAGGTACTCCACCGTACCT
TGCCAGCGCCTCGTCACTGTTGATGTTATTATCTATTGTGTTAGACGTAG
TGCTAATTATAACCATAAGACGAATATAGTGCTCCTCACCAGCCTCACTC
TCCTCATCACACACTAGTCTATGCATTCACACATGGCCATCCTCTATTCA
TGTCCGCCATCGGCCCTCCCTGTTCTAGTTCAACTTCATGTGCACGCTGT
TGTAGTTATTAGCCACGTCAATACATCTCACGCTCCACCAATTTTACTTT
TCTTCTTTATTTCTACCCCACCCCATTTATCTATCTTATCGTCTTTTTTT
TGTCCCTCTCGCCTCCCACTTTCCTACCTTATAATATATTATTATATATT
ATCCTTATATTTATATGTACTTTCACATCTTCTCATATTCTCACATTACT
CATCTATCACTCTTTTTCATTTAATTTATTCGCTCTCTTTACTCGTTATT
CCTCACTCCTCTCATATTTGATCTCCGCACTCTCTACTCTATGTGCATCC
TACTCTTACATGTCTTCTCTATCCTTCTCGCCCATATCTCCTTCTCTTCT
CTATATTCTCATATATTTCTCTTCTNGCTCCTCTCACCACTATTCCTTCT
CTGATTCATACCTCACCTGTCTTCTCGCGCTCTCTTATTATATTACTATT
CTCTACTTCATCCCTCTCTTCATGTATATCTCCTAGTGCTCTCCACACAC
CTCCTATCTTAATTACCTCTCTATCACAGTGTCTCTGCCTGTTTCTCGCG
CGTCATATGTTACACTCGTATCTTCTACTACCTTCATAGATGTCATCTCT
ATCTACACTCCAACTACTTTTCTACCAACTAACTCACAATATCATTATCT
CATCTATCCTATCTCCACTCATCTGCTCTCTCCACACTCAGTCTCACTCT
GCTCTTCTCACGTCCTGTTATGTATACTATTCTCCTGTCTACTTCGTTCT
TCATCTTNCTCCGCTTCTACTCTCTATCTTATATATCTGCACATCGTCTT
TTCTACCATCTCATCCATGTCTCCCTTCTATCTTCTATTTTCTCATATCT
CTACACTATCTTCTTCGCCTTGTCATCTATGTTCTTTTCTCACTCTCTCT
CCTCTCTCTCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_i19.b1 MSMg01no436_i19.b1 CHROMAT_FILE:
MSMg01no436_i19.b1 PHD_FILE: MSMg01no436_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:39 2005
         (563 letters)



>mm_chr1_154741653_154742615
          Length = 963

 Score = 1062 bits (549), Expect = 0.0
 Identities = 560/564 (99%), Gaps = 1/564 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcttttnaaaaggagattgttgtgcacgcctttgatcccagcactcgggaggcagagg 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aggcttttaaaaaggagattgttgtgcacgcctttgatcccagcactcgggaggcagagg 259

                                                                       
Query: 61  caggcagatttctgagttcgaggccagcctggtcaacaaagtgagttccagaacagccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caggcagatttctgagttcgaggccagcctggtcaacaaagtgagttccagaacagccaa 319

                                                                       
Query: 121 ggctatacagaggaaaaa-agaaaaaaaaaggagattgtttcacaggaaacactagtaaa 179
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggctatacagaggaaaaagaaaaaaaaaaaggagattgtttcacaggaaacactagtaaa 379

                                                                       
Query: 180 gaaaataacagcacaaatgaaataggtcatggtatagtcaagagcacaaggaaaagatga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaaaataacagcacaaatgaaataggtcatggtatagtcaagagcacaaggaaaagatga 439

                                                                       
Query: 240 ggctctctgacaagccctacctaacagcttttccctttttaagacccataccagctacca 299
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggctctcagacaagccctacctaacagcttttccctttttaagacccataccagctacca 499

                                                                       
Query: 300 aatgttcaaattgccattttcacacctctgcttctcctatctgtgagaaacatgtgcctg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatgttcaaattgccattttcacacctctgcttctcctatctgtgagaaacatgtgcctg 559

                                                                       
Query: 360 gtcagaacatttaatattatgcattacatcagggcagatacaatttttaaaaaggtattt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtcagaacatttaatattatgcattacatcagggcagatacaatttttaaaaaggtattt 619

                                                                       
Query: 420 gaaaaaaagatgtataagcaagctcagcctgtttgtacaatatgaatgtgctcaattccc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaaaaaaagatgtataagcaagctcagcctgtttgtacaatatgaatgtgctcaattccc 679

                                                                       
Query: 480 tcccccttaaaactcccactcatctttcaatatttacgtgaaatctcatctccaccaaga 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcccccttaaaactcccactcatctttcaatatttacgtgaaatctcatctccaccaaga 739

                                   
Query: 540 tgccctcatcacccatctccacct 563
           ||||||||||||||||||||||||
Sbjct: 740 tgccctcatcacccatctccacct 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)