NCCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATAGCTTCACCAATAGTGTCAGACCTTGGGACCTTCCCT
TAAGCTGGATCCCACTTTGGGCCTGTCACTGAACCTTCTTTTTCTCAGGC
TCCTATCCATTTCCATCCCTGTAATTCTTTCAGATAGAAACAATTAAGGG
TCAGAGATGTGACTGTGGGATGGCAACCCATCCCTCACTTGGTGTCCTAT
CATCCTGCTGGAGGTGGGTTTTATAAGTTCCCTCTCCCTACTGTCAGGCA
TTTCATAAAAGGTCCCTCCCTATGATTCCTGGGAGTCTCTCACCTCCCTG
GTCTCTGGTGTCTTCTCAGGGAGGGGGTTCCCCCAACCTCCTTTTTCCTA
GGGTTGCCTGTTTACATTCTTTCTGCTGGCCCTCAGGGATTCAGTCCTTT
TCCCTCACCCAATACCAGATCAGGTTCCCCTCTATTCTCTACTACCTCAC
CCCACCCCATCCACATTCCTTCCCAAGTCCCTCCCTCCCTCCCTCCTCCA
TTCCTCCTTCCTTCCCTCTCCACTTAGAGTGGGTGTTACAGCTCTGCAAT
TTTACTAGCCATGTAGGAGGGTTCCTCTTTTTTTTACACCTCCTTCTCAT
GGGTTTGTCACCTGAGGTTTTTTTTTTTTCCCCTTCGACTGTATGACTTG
TTCGTCCTTTTTCACATACCTTAACTCCTGCTTTCCCCTGAACCTGTTT

NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATCTCTGCAGGTAAAGAA
AATAAAAATTTTCAAATACAAGTTGTATCCTTCTTGGGAGGTATACATAC
ACTAGAGTTCCACATTTTAAAAAAAAATCATTTCATTCATTAAACATGTA
ACGAAGAAATTTGAATGTATTTCCCAAATATTATTCCCCAAAATACTGTG
ATATATGTTGCATTCTTTAAATTATGTCTCTGATTATATATTGAAATATG
CCATTAAGTATACATTTCTGATGTACTAAATATATTTTGTTATAAGTAAG
TATGTGCCAAGCAATATTTTAGTTAGGGGACATACATAGAACATTCTGAT
ATTTAAATTTAACTGATAATTCTGGTTTTGTTGTTGTTTCCTGTGTGTAG
AAGGAGAGAGAAATTAAGTAAGAGAGGACATAGATCATGGAAATGTTAAA
ACAACAACAACAACAAGAGCAGCAGCAGCATATCCCTTAGATGAATTAGT
ACAGAAGATTTAACTGGTGCACAGCCTGTCATAGTTTTAGGTATTAAAAA
AAACATCAATTGAGAAAGGCCATGTTGGAACGTAGCCAATGGTAAATAAA
GATAAGAAGGTTTTACCCTAGGTATAACCACCTAGTGCAAAAAATGTTCT
CCTCCCCCTCCTAGGAAATCTCCCAAGGGTTCACCCCTCGGGGGCTCGGT
AAATAACA

Query= MSMg01no436_l02.g1 MSMg01no436_l02.g1 CHROMAT_FILE:
MSMg01no436_l02.g1 PHD_FILE: MSMg01no436_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:50 2005
         (427 letters)



>mm_chr1_97895334_97896158
          Length = 825

 Score =  799 bits (413), Expect = 0.0
 Identities = 423/427 (99%), Gaps = 2/427 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatctctgcaggtaaagaaaataaaaattttcaaatacaagttgtatccttcttggga 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcatctctgcaggtaaagaaaacaaaaattttcaaatacaagttgtatccttcttggga 566

                                                                       
Query: 61  ggtatacatacactagagttccacattttaaaaaaaaatcatttcattcattaaacatgt 120
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 565 ggtatacatacactagagttccaca--ttaaaaaaaaatcatttcattcattaaacatgt 508

                                                                       
Query: 121 aacgaagaaatttgaatgtatttcccaaatattattccccaaaatactgtgatatatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aacgaagaaatttgaatgtatttcccaaatattattccccaaaatactgtgatatatgtt 448

                                                                       
Query: 181 gcattctttaaattatgtctctgattatatattgaaatatgccattaagtatacatttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 447 gcattctttaaattatgtctctgattatatattgaaatatgccattaagtataaatttct 388

                                                                       
Query: 241 gatgtactaaatatattttgttataagtaagtatgtgccaagcaatattttagttagggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gatgtactaaatatattttgttataagtaagtatgtgccaagcaatattttagttagggg 328

                                                                       
Query: 301 acatacatagaacattctgatatttaaatttaactgataattctggttttgttgttgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acatacatagaacattctgatatttaaatttaactgataattctggttttgttgttgttt 268

                                                                       
Query: 361 cctgtgtgtagaaggagagagaaattaagtaagagaggacatagatcatggaaatgttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cctgtgtgtagaaggagagagaaattaagtaagagaggacatagatcatggaaatgttaa 208

                  
Query: 421 aacaaca 427
           |||||||
Sbjct: 207 aacaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 825
Length adjustment: 9
Effective length of query: 418
Effective length of database: 816
Effective search space:   341088
Effective search space used:   341088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)