Query= MSMg01no437_c17.b1 MSMg01no437_c17.b1 CHROMAT_FILE:
MSMg01no437_c17.b1 PHD_FILE: MSMg01no437_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:27 2005
(539 letters)
>mm_chr1_71355612_71356550
Length = 939
Score = 957 bits (495), Expect = 0.0
Identities = 528/539 (97%), Gaps = 2/539 (0%)
Strand = Plus / Minus
Query: 2 atgctccaggtactggatcaccccgtcggacaccttactgggaattacaactctctgata 61
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 739 atgctccaggtactggatcaccctgtcggacaccttactgggaattacaactctctgata 680
Query: 62 ctctaatcaccttgattatgtgaagatagtaacttagcatccatattcaataaatcaaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 679 ctctaatcaccttgattatgtgaagatagtaacttagcatccatattcaataaatcagaa 620
Query: 122 taacctcctctccagagatagggtctgagacaagatagcagaattctcatacacatttat 181
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 619 taacctcctctccagagatagggtctgagacaagatagcagaattctcattcacatttat 560
Query: 182 aaccccacccttcgctttccacgttcccgcctctctactgcttcagaagtgagaacactt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaccccacccttcgctttccacgttcccgcctctctactgcttcagaagtgagaacactt 500
Query: 242 cttcacagatgtaactataactcgtgctataatcatttatcaaatgattctaattaacat 301
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 499 ccacacagatgtaactataactcgtgctataatcacttatcaaatgattctaattaacat 440
Query: 302 gctatagctatgctgaagtcatctctcttttaaattagtctttgatagttaatgtgttta 361
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 439 gctatagctatgctgaagtcatctttcttttaaattagtctttgatagttaatgtgttta 380
Query: 362 gaatttctaaagtattaatattgcagaaagcattcagcatcaggagttctttagttgaag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaatttctaaagtattaatattgcagaaagcattcagcatcaggagttctttagttgaag 320
Query: 422 catgtggcatagattgtacctaagatgctttcatggatgtagatggataagtgtctcaaa 481
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 319 catgtggcatagattgtacctaagatgctttcatggatgtagatgggtaagtgtctcaaa 260
Query: 482 ttcaagtctttgtaagggagcaaaagacatgcctagaaaa-gaagttctaataaatggt 539
||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 259 ttcaagtctttgtaagggagcaaaagacacgcctagaaaaaga-gttctaataaatggt 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_c17.g1 MSMg01no437_c17.g1 CHROMAT_FILE:
MSMg01no437_c17.g1 PHD_FILE: MSMg01no437_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:27 2005
(485 letters)
>mm_chr1_71163169_71164053
Length = 885
Score = 806 bits (417), Expect = 0.0
Identities = 472/499 (94%), Gaps = 14/499 (2%)
Strand = Plus / Plus
Query: 1 ataccctgactgtatgctgtattgattgccctggttaagccatttaaggtttaatctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataccctgactgtatgctgtattgattgccctggttaagccatttaaggtttaatctttc 260
Query: 61 cagccagtctcatgcttcaagtgacctttgcagtgtttatcatatgccagtcagtatgtg 120
||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 261 cagccagtctcatgcctcaagtgatctttgcagtgtttatcatatgccattcagtatgtg 320
Query: 121 tgatggttcatctctattgccaatgtgatgaaatctatgatcacttgggggagactgtct 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tgatggttcatctctattgccaatgtgatgaaatctatggtcacttgggggagactgtct 380
Query: 181 tcattagattaattgaaatgatacctgctcattgtgagtggcaccattccctatatagtg 240
||||||||||||||||| | || ||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tcattagattaattgaagtaattcctgcccattgtgagtggcaccattccctatatagtg 440
Query: 241 ggttggagtattcaggggagagacaagatgagagagggaaga--------------agcc 286
|||||||| | |||||||||||||||||||||||||||||| ||||
Sbjct: 441 ggttggaggaggcaggggagagacaagatgagagagggaagaggagagagggaagaagcc 500
Query: 287 atcatgggatagaagaagaatgtgcagaagaggagaaaggagagccaccatgggttagct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcatgggatagaagaagaatgtgcagaagaggagaaaggagagccaccatgggttagct 560
Query: 347 gaaccatgaaaacatggccatgtaggctggccagatgaaacatagtaagtaaggtcatga 406
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 gaaccatgaaaacatggccatgtaggctggccagatgaaacataataagtaaggtcatga 620
Query: 407 gttatggatagcaaggtagagtctaacagcatggagggtggagagttgcccagctattat 466
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 gttatggatagcaaggtagagtctaacaacatggagggtggagagttgcccagctattat 680
Query: 467 gctgcttaaggcatattta 485
|||||||||||||||||||
Sbjct: 681 gctgcttaaggcatattta 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
