CCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACATTTTTCTCCAATGACCATGCCGTCTATGCAGCACTTC
CATTTTTTTCTTATTAATAAGTTAATAACCTTGCTTTTGTTCTGTTTTGT
TATTTTTGTTTTGGAAACAAGGTCTTAAATATCCTAGGCTGACCTTAAAC
TAAGCATAGAATGATCATGGCACTACCTGACTATTTTACAAACTTTACTT
TATACAGTGCTGGGACTTAAACTCATGGCTTGATCCATGCTAGACAATAT
TCTCCTACATGAGCTATACCCCCATTTTAACTCATGGTGTGTGTGTGTGT
GTGTGTTGATTATATTTGATTATGAAATGTTCCTCATAGGTTTGTGGCTT
TAAATTCATGGCTATACAAAACAGCGTCCCTATTTTGTAATGCCGTGTGA
TTGTTATGAACTGTACATGTTTATGATTTGCATAAAGTGCGTCTCTTGTC
TCCTCTCATTTATTTATCCTCTACTCTCTTCCACATTTTTTCTGCCCTCT
ATCTGATATCTTACTGCCATTCTCTATTTTCTTTCCCCTATTTACCTTAT
CCAATTCTCTTCTTCTCCTCTTGTTCTGTCCTGTTATTCCCCCGTCCTTT
GTCTTATTTTCCGTCCCTTCTATTTCTTTCTTCACCTATTCCCCTATTCC
CCTTCTCACTTATTTTTATTTATTAAACTACTTCTTACTCACTTTATTTT
TCCTTTACGCTTTTTTCCACATACTCGTTCTTTCTTN

TACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTATCTCAGGAATTCAAGAATCTCTAGAGGTTGGGAAT
ACAGACATGCCAAGAAATAGGGGTGGTTAAGGATATATGAGTCCTTATCA
TATGTGCCAACTAGAATAAAAACACAAAAATTCTTTACAATCATTGCAAA
TTATGAATATTTTCTCTGTTTCCATACATTGTATATATGCCAGATGCATG
CTTTGTAAGCTAATTTCCCTGCTATAAACTCAATATATATGTATATGTAT
GTATATGATGTGTGTAATATGTATATGTTTATCGTATATGCNNCCCCCCC
CCACCCCTACTTTTTTTTTTTCCCCTCTTCCCTTCCCTATTTCCCCCTTT
ACCTTCTTTCTTCTTCCCTTTACCCCCCCCCTTTCTCTTTCCCTCTCCCT
TCTTCCTTATTCTCCCCTTTCCTTCTTTCACTTTTCTATCCTTTCCCTCT
TTTTTTCTCTTTCCCCTTTTTCCCCTCTTTTTTTCTCTTTTTCTTCCCTA
TTTCTTTACCCACCTCCTTTTTCCTTCAACCATTCTCTCCTCCATTTCTC
CCCCCTCTTTCTCTCTCTATATCTCTTTCCCTTCACCTCACCCCCCTTTC
CTTTTTATTCCCCCTCTTCTCTTTCCCTTTTTTCCTTTTCCTCCTTTTTT
CTCACTTTTACCTCCTCTCCCTCTTTTTTTCTTTTTTTTCCTCCTTTTTT
CCCCCTTATTTCTCTCCCCTTATTCTTCCTTTCCCTTATCCTTCCTTTTC
TTACTCCCTTTTTTATTT

Query= MSMg01no437_d09.b1 MSMg01no437_d09.b1 CHROMAT_FILE:
MSMg01no437_d09.b1 PHD_FILE: MSMg01no437_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:31 2005
         (344 letters)



>mm_chr1_26755865_26756608
          Length = 744

 Score =  572 bits (296), Expect = e-168
 Identities = 302/304 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcacatttttctccaatgaccatgccgtctatgcagcacttccatttttttctt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcacatttgtctccaatgaccatgccgtctatgcagcacttccatttttttctt 264

                                                                       
Query: 65  attaataagttaataaccttgcttttgttctgttttgttatttttgttttggaaacaagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attaataagttaataaccttgcttttgttctgttttgttatttttgttttggaaacaagg 324

                                                                       
Query: 125 tcttaaatatcctaggctgaccttaaactaagcatagaatgatcatggcactacctgact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttaaatatcctaggctgaccttaaactaagcatagaatgatcatggcactacctgact 384

                                                                       
Query: 185 attttacaaactttactttatacagtgctgggacttaaactcatggcttgatccatgcta 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 attttacaaactttactttatacagtgctgggacttaaacttatggcttgatccatgcta 444

                                                                       
Query: 245 gacaatattctcctacatgagctatacccccattttaactcatggtgtgtgtgtgtgtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gacaatattctcctacatgagctatacccccattttaactcatggtgtgtgtgtgtgtgt 504

               
Query: 305 gtgt 308
           ||||
Sbjct: 505 gtgt 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no437_d09.g1 MSMg01no437_d09.g1 CHROMAT_FILE:
MSMg01no437_d09.g1 PHD_FILE: MSMg01no437_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:31 2005
         (254 letters)



>mm_chr1_26951535_26952188
          Length = 654

 Score =  352 bits (182), Expect = e-101
 Identities = 224/238 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaagaatctctagaggttgggaatacagacatgccaagaaataggggtggttaaggat 60
           ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 406 ttcaagagtctctagaggttgggaatacaggcatgccaagaaataggggtggttaaggat 347

                                                                       
Query: 61  atatgagtccttatcatatgtgccaactagaataaaaacacaaaaattctttacaatcat 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 346 atacgagtccttatcatatgtgccaactagaataaaaacacaaaaattctttacaataat 287

                                                                       
Query: 121 tgcaaattatgaatattttctctgtttccatacattgtatatatgccagatgcatgcttt 180
           ||||||||||||| |||| |||||||| ||||| ||| ||||||||||||||||  ||||
Sbjct: 286 tgcaaattatgaacatttgctctgttttcatactttgcatatatgccagatgcacacttt 227

                                                                     
Query: 181 gtaagctaatttccctgctataaactcaatatatatgtatatgtatgtatatgatgtg 238
           |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct: 226 gtaagctaatttccctgctagaaactgaatatttatgtatatgtatgtatatgatgtg 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)