BAC Information

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BAC

Clone NameMSMg01-437G07
Chromosome1 (Build37)
Map Location 65,706,020 - 65,706,458
singlet/doubletsinglet
Overlap genenone
Upstream geneCcnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437G07.T7 (MSMg01no437_g07.b1)MSMg01-437G07.TJ (MSMg01no437_g07.g1)
ACCAG528237AG528238
length758744
length of high quality
(start - end)
246 (71 - 316)439 (81 - 519)
definitionCHROMAT_FILE: MSMg01no437_g07.b1 PHD_FILE: MSMg01no437_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:46 2005CHROMAT_FILE: MSMg01no437_g07.g1 PHD_FILE: MSMg01no437_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTCTAAATTTGCGGCGCTAATAGACTACTATTTCGACAGATCCGCGG
AAATCTTTAGTTTTCCGCCCCATTTTTTTAATGGGGTGATTTGATTTTCT
GGAGTTCAACTTCTTAAGTTCTTTATATATATTGGATATTAGCCCCCTAT
CAGATTTAGGATTGGTAAAGGTATTTTCCCAATCTGTTGGTAGCCTTTTT
GTTTAATTGACAGTATCCTTTGCCTTACAGAAGCTTTGCAATTTTATGAG
GTCCCTCTTGGCGATTCTTGATCTTATAGCACAAGCCATTGCTGTCCAGG
AATTTTTCCTCTGTGCCCATATTTCTTGGCTCTTCCCCACTTTCTCCTCT
ATAATTTTCAGTGTCTCTGCTTTTATCTGGAATTCTTTGATCCACTTAGA
CTTGAGCTTTGTACATCTTCTGCTTTCCATTTTCTGCTATCTTCTTCAAT
TTACCGCTACTACATTTATCATTTATTGATATCCTTCCCAAGTTTGACAT
TTTATATAAGACTTTTATTTGTTTGCCTATAGCTATCCTTTGACATTTCA
TATTATTCGATCCTGTTTTATTGCCGCTCTTCCCCCTTACTTTATTTTTT
ACTTTCCCTCTCCCCTTATACCTAGTAGGCCTTACCCTACCCTTTTTGTG
TATCTAGTTTTTCTCTTCCCCCTACTATCGCCCGAAATGTTCCTTTTACC
ATTTTGCTATTGAATTATACCTACGTGTCAATTTTTTCCTCCCTCCTTTC
TTGTTTTN
TTTCCCGATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACTTATTGTTTGTGCAG
ATTGAATCAGGCGAGTTCATTTGTCCAAACTTGCAGGTGCACTGGTCTTC
CATAGTTGATGTTCTTGAAGATGTCCCCATTCTAGACACACAGCGGTGGC
ATCAGCTGGGGCAAGCTTTTTGCCCTTCACCTAGTCCTTATCTCTCTTTC
TGCCTTTCTATGCTTTGGAATACTTGGAAAGTCAGCCTTTTATTTTAAAT
ATGTTGCAGTGAGAACTAGTTCCAACTATTACATTCAACCTAAAAATACA
AGATTTACCTTGGTTTTTAAGTAACTTTATTGGTATATAATTGACATGAA
AAGGGATTTATTTAAGCAGCCTTTTGAGTTTGGAGACACCGTTGTTTTGA
GTTTGAAATAAAGTCAGCAATAATAGTAAAGAGGTGAGGGGTTTTTCTTA
TTTTCTTTATTTTTTAATATTGCGTGCGACTGTAAACTACTAAATTTTTA
TTATTCACTGATGAATATCAGGAACTTGGGTGAACTTTAAGAGAACAAAG
CTAATGCTAGTGGTATGTCCCTGCTTGCGTGCTGCGTCTTCTGAGTACTT
ACGATGCTTTTATCTCTTTCGGCCTAACTTTCATATGTTCCCTTTTCTCT
TTGTACCTTCCCTCCTTTTCTCCTTTTAGTCACTTCCCATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_g07.g1 MSMg01no437_g07.g1 CHROMAT_FILE:
MSMg01no437_g07.g1 PHD_FILE: MSMg01no437_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:46 2005
         (439 letters)



>mm_chr1_65705820_65706658
          Length = 839

 Score =  849 bits (439), Expect = 0.0
 Identities = 439/439 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacttattgtttgtgcagattgaatcaggcgagttcatttgtccaaacttgcaggtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tctacttattgtttgtgcagattgaatcaggcgagttcatttgtccaaacttgcaggtgc 580

                                                                       
Query: 61  actggtcttccatagttgatgttcttgaagatgtccccattctagacacacagcggtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 actggtcttccatagttgatgttcttgaagatgtccccattctagacacacagcggtggc 520

                                                                       
Query: 121 atcagctggggcaagctttttgcccttcacctagtccttatctctctttctgcctttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atcagctggggcaagctttttgcccttcacctagtccttatctctctttctgcctttcta 460

                                                                       
Query: 181 tgctttggaatacttggaaagtcagccttttattttaaatatgttgcagtgagaactagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgctttggaatacttggaaagtcagccttttattttaaatatgttgcagtgagaactagt 400

                                                                       
Query: 241 tccaactattacattcaacctaaaaatacaagatttaccttggtttttaagtaactttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tccaactattacattcaacctaaaaatacaagatttaccttggtttttaagtaactttat 340

                                                                       
Query: 301 tggtatataattgacatgaaaagggatttatttaagcagccttttgagtttggagacacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tggtatataattgacatgaaaagggatttatttaagcagccttttgagtttggagacacc 280

                                                                       
Query: 361 gttgttttgagtttgaaataaagtcagcaataatagtaaagaggtgaggggtttttctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gttgttttgagtttgaaataaagtcagcaataatagtaaagaggtgaggggtttttctta 220

                              
Query: 421 ttttctttattttttaata 439
           |||||||||||||||||||
Sbjct: 219 ttttctttattttttaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)