Query= MSMg01no437_l21.b1 MSMg01no437_l21.b1 CHROMAT_FILE:
MSMg01no437_l21.b1 PHD_FILE: MSMg01no437_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:14 2005
(577 letters)
>mm_chr1_179787008_179787984
Length = 977
Score = 1046 bits (541), Expect = 0.0
Identities = 565/573 (98%)
Strand = Plus / Minus
Query: 5 gaattctttccttgttactcacatgccatgtacacttcataaaagtctaataatgttttc 64
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gaattctttccttggaaatcacatgccatgtacacttcataaaagtctaataatgttttc 718
Query: 65 aaatctctttcaaagcttctgtttttaaaattcaaagtgaattaaaaaattaaataccct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aaatctctttcaaagcttctgtttttaaaattcaaagtgaattaaaaaattaaataccct 658
Query: 125 tctgaagttaagggacctgggtggtacgtgagcctcttctcaactgtgaatatgaaagga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tctgaagttaagggacctgggtggtacgtgagcctcttctcaactgtgaatatgaaagga 598
Query: 185 cgctgtcccagggtattcatctgcttggttagtaccatggaactctgaaaaaataaaaat 244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 597 cgctgtcccagggtattcatctgcttggttagtaccctggaactctgaaaaaataaaaat 538
Query: 245 aaaataaggtttctcttttattattttcatagccaaaggtatttgggagtactttcatgt 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 537 aaaataaggtttctcttttattattttcatagccaacggtatttgggagtactttcatgt 478
Query: 305 gttcaatagtatattaaattagttcttttagttaagacattgttcatgcttatacattca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gttcaatagtatattaaattagttcttttagttaagacattgttcatgcttatacattca 418
Query: 365 acatactttcattatttatatttgtttctttcaaccacatagccttctctccatgacagt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 acatactttcattatttatatttgtttctttcaaccacatagccttctctccatgacagt 358
Query: 425 gttatgaactattaaggtcacagaataggggtatagttaagcagtagagggcttgctcca 484
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 357 gttatgaactattaaggtcacagaataggggtatagttaagcattagagggcttgctcca 298
Query: 485 ttctataaagaaatataagctataatacaggatctaacatactgaaaacattcttgtaat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttctataaagaaatataagctataatacaggatctaacatactgaaaacattcttgtaat 238
Query: 545 atcagaatcttatgtgaattaagactatggtga 577
||||||||||||||||||| |||| ||||||||
Sbjct: 237 atcagaatcttatgtgaatgaagaatatggtga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_l21.g1 MSMg01no437_l21.g1 CHROMAT_FILE:
MSMg01no437_l21.g1 PHD_FILE: MSMg01no437_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:14 2005
(494 letters)
>mm_chr1_179616992_179617884
Length = 893
Score = 835 bits (432), Expect = 0.0
Identities = 473/494 (95%), Gaps = 13/494 (2%)
Strand = Plus / Plus
Query: 1 actgtgtagaccaggctggaactcagagatctgcccgcctccgcctctgcctccacctcc 60
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 213 actgtgtagaccaggctggaactcagagatctgcccgcctcc------------acctcc 260
Query: 61 acctccgcctcctcctccgcctccgggtgccaggattaaaggcatgtgccacccttttta 120
||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 261 gcctacgcctcctcctccgcctcccggtgccaggattaaaggcatgtgccacctttttta 320
Query: 121 tttatattcttatccctacatctgactcttgctctttagctcctcccagtgcttggtatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatattcttatccctacatctgactcttgctctttagctcctcccagtgcttggtatg 380
Query: 181 atcagccttagacctggtcattctctagctgtgaacttttcaaagtctgagaaatgacag 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcagccttagtcctggtcattctctagctgtgaacttttcaaagtctgagaaatgacag 440
Query: 241 ttgtcagcacaatttttttttccaaagaaacaaaacaaaaaatggttgtataaatgagct 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtcagcacaatttttttt-ccaaagaaacaaaacaaaaaatggttgtataaatgagct 499
Query: 301 ctgctcttaaggacttaggtgtcctgtagcctcacaagatcatggctctgtatgacaggg 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 500 ctgctcttaaggacttaggtgtcctgtagccttacaagatcatggctctgtatgacaggg 559
Query: 361 gagattggtctataagactacaggaggcaatggtctgtatgaccacaggggagattggat 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gagattggtttataagactacaggaggcaatggtctgtatgaccacaggggagattggat 619
Query: 421 gggcacgggcagcttcagaaggggtaagaggcacaaaacggcagcatcccagggcttccc 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 620 gggcacgggcagcttcagaaggagtaagaggcacaaaacggcagcatcccagggcttccc 679
Query: 481 aacacacctcagct 494
||||||||||||||
Sbjct: 680 aacacacctcagct 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 893
Length adjustment: 10
Effective length of query: 484
Effective length of database: 883
Effective search space: 427372
Effective search space used: 427372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
