BAC Information

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BAC

Clone NameMSMg01-438A20
Chromosome1 (Build37)
Map Location 60,265,595 - 60,266,139
singlet/doubletsinglet
Overlap geneNbeal1
Upstream geneAls2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf
Downstream geneCyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438A20.T7 (MSMg01no438_a20.b1)MSMg01-438A20.TJ (MSMg01no438_a20.g1)
ACCAG528737AG528738
length7601,207
length of high quality
(start - end)		537 (43 - 579)---
definitionCHROMAT_FILE: MSMg01no438_a20.b1 PHD_FILE: MSMg01no438_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:40 2005CHROMAT_FILE: MSMg01no438_a20.g1 PHD_FILE: MSMg01no438_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTATAGCTGCCTAAGGATTGTTCTTTAAGTCTGTCATACGAAGTTTT
GAGGCCAAAATGGGATGAGTTCCAACCAGGTTTAGAAGTACAGTATCCTT
TAGAAGTCTTAGATCTTTGTGTGTACAAATTATGTACATAATTTGATAAT
GCACAAGCACAGGCATTCCTACCATCTTGCCTGTGTGGGGGTCATAGAAT
AATTTCTTGGATCTCTCTATCTACCATATAGTTCTTGAGACAGACTGAGA
CTGTCATGTTTGGCAGCAAGTGCCTACTGAGTCATCTTGCCAGCCCCTTT
GTGTAGTTTGGTTGTAGTGTGCTTTGGTTGCTTTGGTTGCTATAGCAGAA
TCCTGGAGACTGTGATGGAAGCTCTCAAGTTTCTTTTCTCTTAGTTTTGG
AGCCACAACTGGATTTGGTTTTTGACTGATGGTCTTCTCCGTAGATATTA
GAAAGACTGATAGCTCTGTTCACAAGACCAGCAATTTTGTTGTATCAGGC
ACCTTTCTCATCTTACCTAACTGTAATCACCTCGTCATAAGCCCTGGCTC
CAGTCTAGTCTAGCTCCAGTCTAGCTCCAGTGTAAATTGTAGGTGTGTGA
TTTAAGACAATGGTATTTGAGTTTGGGAGGAAGAGTTCCGTCTGTACCAT
TTTATTTCTATCCCCTTTCCTCCCGATCACAATAAAAGGAATGGTTTTTT
ACTACATAAT

AACACACAAAACAGATATTGGCGGTTGATCTCTCGCATCTCTCTACGAGC
AGAGGGCTCATACCTATCGGTGTACCTGTTCTAATACATTGGCCTCATCC
CCCCTCCTCCTCTCGGCCTCTCCTTCTGTCGAGTATGGCCCTAGATCCTG
TTCTGAGGTATGAGTTAGTGGAGTATGGCGCATACTCTGATATCGTACAG
TCTGTACGCGCAGCAATGTGTAATATGGCGGAGTATGTTGGATATATCCG
TGATGTGCTTCATAGACACCGGGTGTGGTGCGCAATCTCGCAGCGCGCTT
GTATGGTGCCGTGTGTGAGTGTAACAATAGAAAATGTGGCGTTAGAGTTT
CTGGCGTTATGAGCGGATACTAATACGTGCTAGCGTATCGCAACAGATGT
TAAGTTGCCTATTATACGTTAGCTAGACGTAAAGCAGCGTACTTGTGCTG
CTCTNTCACATTAGATGCGACAGAGTACACCTATCTCCTACCTAATTATT
CCATAGTATGCTGTTCTAGATGGACGTATAGACTACAAGCACCTGCACTT
TCTCAATGCCCATATTCTCAGCGACCGATGCTCGTGTGCTTCATCACTGA
CATACCGTACACTGACATAACAAGCACATATGAATATCTCTCCTCGCTTA
CTTAGTGACACTCATATGCAAGTTTCTTCCGTCGACGGTCGCGCGCGCGC
GCCCTGTTATATCGACGCCCATTCGCCCGATATCTCGCTAGACTGATGAT
CCTCTTATGCGCAACATACTCACACGTCGTCGCACTCTTGTANTCTCTTA
CGTACTGTATAACTGTTCGTGCGTTAACACGCAGCACGTATATAGAGCTC
ACTCTTCCGTCGATCGAGCTTAGTACTCGTCAGTCATATGTGTCGCGNGC
ACGACCATATACTGACATCTATCGATGCGAACGATCATGATACGAANACC
TCTCACGCTTCTCTCTTCGCATCCCTATATCTACTCGCTAATCGACGTTT
CTCGCACAGCTCATAATCCAATTAACAAATACACTGTACCCACAGCACTC
TCCGATATTACATCACATTAGCTGGTTCACTTGCGATCATGACACTGATA
TGTATAGTATGTGCGCACTAGCGCACGCCACATGATAGTGTNGTATTACA
CGATGATGCCACGTCGTCAGTGCACGTTGTCTGTTGTACACATTTGTNCT
ACTCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_a20.b1 MSMg01no438_a20.b1 CHROMAT_FILE:
MSMg01no438_a20.b1 PHD_FILE: MSMg01no438_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:40 2005
         (537 letters)



>mm_chr1_60265403_60266339
          Length = 937

 Score =  853 bits (441), Expect = 0.0
 Identities = 512/555 (92%), Gaps = 32/555 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttatagctgcctaaggattgttctttaagtctgtcatacgaagttttgaggcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaattctttatagctgcctaaggattgttctttaagtctgtcatacgaagttttgaggcc 252

                                                                       
Query: 65  aaaatgggatgagttccaaccaggtttagaagtacagtatcctttagaagtcttagatct 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aaaatgggatgagttccaactaggtttagaagtacagtatcctttagaagtcttagatct 312

                                                                       
Query: 125 ttgtgtgtacaaattatgtacataatttgataatgcacaagcacaggcattcctaccatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttgtgtgtacaaattatgtacataatttgataatgcacaagcacaggcattcctaccatc 372

                                                                       
Query: 185 ttgcctgtgtgggggtcatagaataatttcttggatctctctatctaccatatagttctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttgcctgtgtgggggtcatagaataatttcttggatctctctatctaccatatagttctt 432

                                                                       
Query: 245 gagacagactgagactgtcatgtttggcagcaagtgcctactgagtcatcttgccagccc 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 433 gagacagactgagactgccatgtttggcagcaagtgcctactgagtcatcttgcctgccc 492

                                                                       
Query: 305 ctttgtgtagtttggttgtagtgtgctttggttgctttggttgctatagcagaatcctgg 364
           ||||||||||||||||||||||||||||||||||||         |||||||||||||||
Sbjct: 493 ctttgtgtagtttggttgtagtgtgctttggttgct---------atagcagaatcctgg 543

                                                                       
Query: 365 agactgtgatggaagctctcaagtttcttttctcttagttttggagccacaactg----- 419
           ||||||||||| || |||| |||||||||||||| |||||| ||||| |||||||     
Sbjct: 544 agactgtgatgtaaactctgaagtttcttttctcatagttt-ggagcaacaactgtgtga 602

                                                                       
Query: 420 -----------------gatttggtttttgactgatggtcttctccgtagatattagaaa 462
                            ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 603 gatcaaggtcctagcaggatttggtttttggctgatggtcttctccgtagatattagaaa 662

                                                                       
Query: 463 gactgatagctctgttcacaagaccagcaattttgttgtatcaggcacctttctcatctt 522
           ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 663 gactgatagctcttttcacaagaacagcaattttgttgtatcaggcacctttctcatctt 722

                          
Query: 523 acctaactgtaatca 537
           |||||||||||||||
Sbjct: 723 acctaactgtaatca 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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