BAC Information

Click to search

BAC

Clone NameMSMg01-438F03
Chromosome1 (Build37)
Map Location 66,478,769 - 66,558,755
singlet/doubletdoublet
Overlap geneMtap2, C030018G13Rik
Upstream geneLOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
Downstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438F03.T7 (MSMg01no438_f03.b1)MSMg01-438F03.TJ (MSMg01no438_f03.g1)
ACCAG528943AG528944
length742746
length of high quality
(start - end)		567 (69 - 635)499 (77 - 575)
definitionCHROMAT_FILE: MSMg01no438_f03.b1 PHD_FILE: MSMg01no438_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:03 2005CHROMAT_FILE: MSMg01no438_f03.g1 PHD_FILE: MSMg01no438_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,558,298 - 66,558,755)(66,478,769 - 66,479,267)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAACTGTGTTCCTTTGTTTCTAAACAAAATAGAAGAAATGCTTGAT
AACTTCACAGATCATAAGGCATGAAGATAAACAGCAAGAATGAAATTCAG
GATCATCCAATAATAATAAGAAAGCCTTAGGGGCATGACACATTGAGAAA
GGAAAGACCTGAGGCCAGATAGCTGTTTCTGTACCAAACTTATGTCAAAA
TAATGCTGCAAAAATTCAAGCAGCTAGACATCCGAGTCTCTCAAAATTCA
AACACCAAAGCTGTAACCCTCCATCTGATGATATTTGGAGCCCGGACTTG
GGAGGTAATTTGAATTAAATGAGGTTAGACACTGGTGTCCAGAGCCAGTG
GAACTAAGTTCACGGAGAAACTAGATCTCTTAGTATTTCTTTGCACTTGC
ACAGAGGTGGTCATGTGAGCTCATAGTGGTGGCAGTCACCTTCTAGACAA
GAGAGGAGGCTGCATGGAACTCTTGTGGGCACTGGAACTTTAGACATGTC
CAATCTCTATAAATAACAGAAGTGTCTGTTGATCAATCTCTATGTTTTGT
AGTAGACTCTGAGCACACTCTCAGTATACTATCAGACTAACTCCACAAAG
TTTGAGGTTATCCTTAGTGTCAGACTGTGAATGATAACCTAGTAGTTTTG
AGATGTTCCCGAAATAAAATTCCCCCACCCAAACACAACATG

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGCTTGTTACATGTTGGTTGAGG
CAGAGTTGAAGCAGTCAGGTCAACTCAAAGAAAGCATGGTTCCTCATAAA
ATAAGGAGAATTTCAACATGTGCATCAGGCTGACTCTATTTTTCTGCCAC
CTAAACACTAGGCTCTTATCATCTGTGATTTAAGTAATGGACAAGGTATC
AGACCTTAAACTTCTCAGAGTCCAAGAAACCCTTGTCTTCTCATTCTTCA
TCTGGGCAGAAATGGATTTAAGCACTAAAAAGAAAATATTAGTCCCTTCT
ATAAAGAGCAGCCACCCGATAAGCAAAGAAGTCTGAGAAAAGTAGACTCT
GCCGTGGGAATCCCACATAGTGTTTGCTGGGCTCCTTCATGGATGCAGGT
CTATGCTTCGGGATCAGTATCTACACTGACTTGGTTGCTTTTCTCTGAGT
ATAAGTATATGTAACATCATGTGCTCTGGTTCAGTTTACTCCCTTGAGAG
TAGCAGAAGATGTACCATGATGCCCTACATGGCAAATGCCTCTAGTTCCA
ATATAGCAGTAAGAATAAGTTCCAGATAACTTAAGCTCTTCATACTAAGG
GTAAAGAGGGAGCTTTTGGACCTGCAAAACAGTGGGTTTAAACCTTTCCT
TAAGAGAGGAAACCATTTAATTTACTGGTGAAAACTCCTGAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_f03.b1 MSMg01no438_f03.b1 CHROMAT_FILE:
MSMg01no438_f03.b1 PHD_FILE: MSMg01no438_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:03 2005
         (567 letters)



>mm_chr1_66557789_66558755
          Length = 967

 Score =  886 bits (458), Expect = 0.0
 Identities = 458/458 (100%)
 Strand = Plus / Minus

                                                                       
Query: 110 taggggcatgacacattgagaaaggaaagacctgaggccagatagctgtttctgtaccaa 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 taggggcatgacacattgagaaaggaaagacctgaggccagatagctgtttctgtaccaa 908

                                                                       
Query: 170 acttatgtcaaaataatgctgcaaaaattcaagcagctagacatccgagtctctcaaaat 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 acttatgtcaaaataatgctgcaaaaattcaagcagctagacatccgagtctctcaaaat 848

                                                                       
Query: 230 tcaaacaccaaagctgtaaccctccatctgatgatatttggagcccggacttgggaggta 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tcaaacaccaaagctgtaaccctccatctgatgatatttggagcccggacttgggaggta 788

                                                                       
Query: 290 atttgaattaaatgaggttagacactggtgtccagagccagtggaactaagttcacggag 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 atttgaattaaatgaggttagacactggtgtccagagccagtggaactaagttcacggag 728

                                                                       
Query: 350 aaactagatctcttagtatttctttgcacttgcacagaggtggtcatgtgagctcatagt 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aaactagatctcttagtatttctttgcacttgcacagaggtggtcatgtgagctcatagt 668

                                                                       
Query: 410 ggtggcagtcaccttctagacaagagaggaggctgcatggaactcttgtgggcactggaa 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ggtggcagtcaccttctagacaagagaggaggctgcatggaactcttgtgggcactggaa 608

                                                                       
Query: 470 ctttagacatgtccaatctctataaataacagaagtgtctgttgatcaatctctatgttt 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctttagacatgtccaatctctataaataacagaagtgtctgttgatcaatctctatgttt 548

                                                 
Query: 530 tgtagtagactctgagcacactctcagtatactatcag 567
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgtagtagactctgagcacactctcagtatactatcag 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no438_f03.g1 MSMg01no438_f03.g1 CHROMAT_FILE:
MSMg01no438_f03.g1 PHD_FILE: MSMg01no438_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:03 2005
         (499 letters)



>mm_chr1_66478569_66479467
          Length = 899

 Score =  965 bits (499), Expect = 0.0
 Identities = 499/499 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcttgttacatgttggttgaggcagagttgaagcagtcaggtcaactcaaagaaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcttgttacatgttggttgaggcagagttgaagcagtcaggtcaactcaaagaaagca 260

                                                                       
Query: 61  tggttcctcataaaataaggagaatttcaacatgtgcatcaggctgactctatttttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttcctcataaaataaggagaatttcaacatgtgcatcaggctgactctatttttctg 320

                                                                       
Query: 121 ccacctaaacactaggctcttatcatctgtgatttaagtaatggacaaggtatcagacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacctaaacactaggctcttatcatctgtgatttaagtaatggacaaggtatcagacct 380

                                                                       
Query: 181 taaacttctcagagtccaagaaacccttgtcttctcattcttcatctgggcagaaatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaacttctcagagtccaagaaacccttgtcttctcattcttcatctgggcagaaatgga 440

                                                                       
Query: 241 tttaagcactaaaaagaaaatattagtcccttctataaagagcagccacccgataagcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaagcactaaaaagaaaatattagtcccttctataaagagcagccacccgataagcaa 500

                                                                       
Query: 301 agaagtctgagaaaagtagactctgccgtgggaatcccacatagtgtttgctgggctcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaagtctgagaaaagtagactctgccgtgggaatcccacatagtgtttgctgggctcct 560

                                                                       
Query: 361 tcatggatgcaggtctatgcttcgggatcagtatctacactgacttggttgcttttctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatggatgcaggtctatgcttcgggatcagtatctacactgacttggttgcttttctct 620

                                                                       
Query: 421 gagtataagtatatgtaacatcatgtgctctggttcagtttactcccttgagagtagcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagtataagtatatgtaacatcatgtgctctggttcagtttactcccttgagagtagcag 680

                              
Query: 481 aagatgtaccatgatgccc 499
           |||||||||||||||||||
Sbjct: 681 aagatgtaccatgatgccc 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |