Query= MSMg01no438_f08.b1 MSMg01no438_f08.b1 CHROMAT_FILE:
MSMg01no438_f08.b1 PHD_FILE: MSMg01no438_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:04 2005
(482 letters)
>mm_chr1_152571743_152572624
Length = 882
Score = 864 bits (447), Expect = 0.0
Identities = 471/479 (98%), Gaps = 1/479 (0%)
Strand = Plus / Plus
Query: 4 ggaattccaagcaacactatctgaactggaatttgctaagatttgtcacaactgatgatg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattccaagcaacactatctgaactggaatttgctaagatttgtcacaactgatgatg 264
Query: 64 gtttaaaaaaataaataaataaaatggaagcaagaaaataattagtgaagtgtccagagc 123
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 gttt-aaaaaataaataaataaaatggaagcaagaaaagaattagtgaagtgtccagagc 323
Query: 124 ttagatgtgtggagtttaaacatctgtgcaccatgactgtatcattgcttagcaagtcct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttagatgtgtggagtttaaacatctgtgcaccatgactgtatcattgcttagcaagtcct 383
Query: 184 tcgtgcagaatggctgtgtgttaatgagtccctggtgccaatggtgtgttttatttgttg 243
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 acgtgcagaatggctgtgtgttaatgagcccctggtgccaatggtgtgttttatttgttg 443
Query: 244 ttactgacatggacaccagtaatactgtgaccctcccaagaagccgaactgaatacccag 303
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttactgacatggacaccagtaatcctgtgaccctcccaagaagccgaactgaatacccag 503
Query: 304 gcatatggcagctgcctgccttggcatttgtgatgtttcatttgttaagttcaggataga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 504 gcatatggcagctgcctgccttggcatttgtgatgtttcatttgttaagttcatgataga 563
Query: 364 gactaaatgtctttcttttttttctcaatgaaaagaggtacatttaaatattgttaccaa 423
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 564 gactaaatgtctttcttttttttctcaatgaaaagaggtaggtttaaatattgttaccaa 623
Query: 424 gtgctgaagaactttagaaattcattttgttttaaatactgtttttcattcatttcaat 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtgctgaagaactttagaaattcattttgttttaaatactgtttttcattcatttcaat 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_f08.g1 MSMg01no438_f08.g1 CHROMAT_FILE:
MSMg01no438_f08.g1 PHD_FILE: MSMg01no438_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:05 2005
(492 letters)
>mm_chr1_152692087_152692978
Length = 892
Score = 938 bits (485), Expect = 0.0
Identities = 490/492 (99%)
Strand = Plus / Minus
Query: 1 cttttaaagggtccagctttaggcaatgtaaggaacactactggccttaatggaaaagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cttttaaagggtccagctttaggcaatgtaaggaacactactggccttaatggaaaagca 633
Query: 61 ttgatgcagaatttggttttcaggctgagttacttttcctgctacatcactcactgtaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttgatgcagaatttggttttcaggctgagttacttttcctgctacatcactcactgtaaa 573
Query: 121 aaatatgcaaacaaatgtactctaaagggcacatagactcacatggccaactggaccagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aaatatgcaaacaaatgtactctaaagggcacatagactcacatggccaactggaccagc 513
Query: 181 cacagtggacttgatggatgtacatgcatgtgtgcagctgtgtgatgaagctatgctaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cacagtggacttgatggatgtacatgcatgtgtgcagctgtgtgatgaagctatgctaac 453
Query: 241 agactataattgggcattcacagcttgttcctgacatgataggatgctagggaataaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 agactataattgggcattcacagcttgttcctgacatgataggatgctagggaataaatc 393
Query: 301 tgatgtcttatgatattctccagttaagcatctcagggtactgcggcagctattgggtat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgatgtcttatgatattctccagttaagcatctcagggtactgcggcagctattgggtat 333
Query: 361 gaatgtgttctcatgttcagcttctattgaaatagttaggttgtattagattccttgtca 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 332 gaatgtgttctcatgttcagcttctattgaaatagttaggttgtattagtttccttgtca 273
Query: 421 gtttttctgcaatgtcctagtgtcctggttattgtctgttgtttgngcattttgagggaa 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 272 gtttttctgcaatgtcctagtgtcctggttattgtctgttgtttgtgcattttgagggaa 213
Query: 481 ccctgaaaaatg 492
||||||||||||
Sbjct: 212 ccctgaaaaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
