BAC Information

Click to search

BAC

Clone NameMSMg01-438H21
Chromosome1 (Build37)
Map Location 48,063,034 - 48,226,564
singlet/doubletdoublet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438H21.T7 (MSMg01no438_h21.b1)MSMg01-438H21.TJ (MSMg01no438_h21.g1)
ACCAG529073AG529074
length777812
length of high quality
(start - end)		489 (40 - 528)169 (74 - 242)
definitionCHROMAT_FILE: MSMg01no438_h21.b1 PHD_FILE: MSMg01no438_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:17 2005CHROMAT_FILE: MSMg01no438_h21.g1 PHD_FILE: MSMg01no438_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,226,119 - 48,226,564)(48,063,034 - 48,063,199)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGATCCGCGGAAT
TCTTGGTAGACTCCTGTGCTCAACAATCGGTCCTCCTCCAAGTTGATGGC
CCTGTTGTCAATAAAAATCTTGTGTCCAAGGAGCCACTGGCACCAAAATG
TATTCTTGGACTACCGGAAGAACAGTGGATGTAGGGATAGGCCTGGTATC
CCATTCATTTATCATCCCAGGCTGTCACTACCCTCTGTTGAGGTGAGACT
TACTCTCCAAGATAGGGGCCCAGATTCACTTCCTGCTCAACAAGCAGCAA
CTAACTGGCCCCAAAGGAAAGCCCAAGAGTGGAAGAAAGACCTCTCCAAC
TGACCCCTGCCGAGAGCAGAGGCTGCCTCGTTTACAGATGAGAACAGTTT
TCTCCATGAAGTTCAGAGATGAGCTGGTGCTTTCCTGGTGGATGGCACAA
ATGTCATCTGGGCTGAATCTCTTACCCACCCTATGCACCCCCACCCCAAC
CCTGTACATCAGCACAAAAAAGCAGAGCTAATTGTCATCAGCAAAGCCTT
GGAACTAGGGGCAGGCAGAAAATTNCATCTACAAGAATAGGCTTTGCCCC
AACCAATGCCCTAATAAAGGACTGCTTACTCTCCAAGAGAAAAAATTTCA
ACCAACCTGGAAATTTTGTATTTCCTGAGAAATTGGGCACTTGGAAAATT
ATTCTTTGCCCCAAAAACCAGGGGAAAAAAAAAACTTGGCCCTCGGTAAA
TACACAAAAAACAAATGGGCTTGTGGG

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTAACATATTGCAGTATATGTAGT
AATTTGGAGACAGTTGATGTCATGGAATTTAAAAGGTGACATATTTCTAG
GTTTTAGAGATTCATGAGTTCCTAGTTGATTCATATCATTATTATTATTA
TTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGNNNNNNNNNN
NNNNNTTTTTNNNTTTNTNNNNNTTTTNNNTNTTTTTTTTTTTTNTTTTT
NTNNNNNNNNNNNNNNNNNNTTTTTTTTTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTTTTTTCCCCTTTTTTTTTTTTNNTTTTTNNTTTTTTTTT
TTTTTTTTTTTTTTCCCCCCCCCCTCCCCCTCTCTCCCTCCCCTCTCCTT
TCCTCTTCTTTTTTCCCCCCTCTCCTTTTCTTCTTTCCNCCTCCTTTCCT
CCCTCTCCTCTTCCCCTTTTCTCCTCTTCCTTCCTCCTCTTCTCCCTCTT
TCTTTTTCTCTTTTCCTCCCTCCCTTTTCCCCTTTCCTCCCCCTTTCCCT
CCCTCCTCTTTTTCCTCCTCTCCCTCTCTCCCTTCCTTCTTTCCCTTCCN
TCCTCTTCCTTCTTCTTTTCTCTTCTCTCTTTTCTTTTTTTCCCCCTCCT
TCTCTTCCTTTTCCTCTCTCCCTCTTTTCCCTCCTTCCTCTCCTTCCCTC
TCTTCCCTCCCTCTTTTCCCTTCCTCTCTTCCTCTCTCTCCTTTTCTTCT
CCCCTCTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_h21.b1 MSMg01no438_h21.b1 CHROMAT_FILE:
MSMg01no438_h21.b1 PHD_FILE: MSMg01no438_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:17 2005
         (489 letters)



>mm_chr1_48225676_48226564
          Length = 889

 Score =  832 bits (430), Expect = 0.0
 Identities = 442/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 44  ctcctccaagttgatggccctgttgtcaataaaaatcttgtgtccaaggagccactggca 103
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 ctcctccaagttgatggccctgttgtcaataaaaatcttgtgtccaaggagccactggca 830

                                                                       
Query: 104 ccaaaatgtattcttggactaccggaagaacagtggatgtagggataggcctggtatccc 163
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 829 ccaaaatgtattcttggactaccggaagaacagtggacgtagggataggcctggtatccc 770

                                                                       
Query: 164 attcatttatcatcccaggctgtcactaccctctgttgaggtgagacttactctccaaga 223
           |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 attcatttttcatcccgggctgtcactaccctctgttgaggtgagacttactctccaaga 710

                                                                       
Query: 224 taggggcccagattcacttcctgctcaacaagcagcaactaactggccccaaaggaaagc 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 taggggcccagattcacttcctgctcaacaagcagcaactaactggccccaaaggaaagc 650

                                                                       
Query: 284 ccaagagtggaagaaagacctctccaactgacccctgccgagagcagaggctgcctcgtt 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ccaagagtggaagaaagacctctccaactgacccctgccgagagcagaggctgcctcgtt 590

                                                                       
Query: 344 tacagatgagaacagttttctccatgaagttcagagatgagctggtgctttcctggtgga 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tacagatgagaacagttttctccatgaagttcagagatgagctggtgctttcctggtgga 530

                                                                       
Query: 404 tggcacaaatgtcatctgggctgaatctcttacccaccctatgcacccccaccccaaccc 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tggcacaaatgtcatctgggctgaatctcttacccaccctatgcacccccaccccaaccc 470

                                     
Query: 464 tgtacatcagcacaaaaaagcagagc 489
           ||||||| ||||||||||||||||||
Sbjct: 469 tgtacattagcacaaaaaagcagagc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no438_h21.g1 MSMg01no438_h21.g1 CHROMAT_FILE:
MSMg01no438_h21.g1 PHD_FILE: MSMg01no438_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:17 2005
         (169 letters)



>mm_chr1_48062834_48063402
          Length = 569

 Score =  306 bits (158), Expect = 6e-88
 Identities = 164/166 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctaacatattgcagtatatgtagtaatttggagacagttgatgtcatggaatttaaa 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctaacctattgcagtatatgtagtaatttggagacagttgatgtcatggaatttaaa 260

                                                                       
Query: 61  aggtgacatatttctaggttttagagattcatgagttcctagttgattcatatcattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgacatatttctaggttttagagattcatgagttcctagttgattcatatcattatt 320

                                                         
Query: 121 attattattattattattattagtagtagtagtagtagtagtagta 166
           ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 attattattattattattagtagtagtagtagtagtagtagtagta 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |