BAC Information

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BAC

Clone NameMSMg01-438K01
Chromosome1 (Build37)
Map Location 19,245,231 - 19,245,483
singlet/doubletsinglet
Overlap genenone
Upstream geneDefb17, LOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b
Downstream geneLOC100040198, LOC226901, Pkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438K01.T7 (MSMg01no438_k01.b1)MSMg01-438K01.TJ (MSMg01no438_k01.g1)
ACCAG529177AG529178
length771795
length of high quality
(start - end)
250 (67 - 316)253 (70 - 322)
definitionCHROMAT_FILE: MSMg01no438_k01.b1 PHD_FILE: MSMg01no438_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:28 2005CHROMAT_FILE: MSMg01no438_k01.g1 PHD_FILE: MSMg01no438_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCTT
TGTTCAGTTTCGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAG
TCCACCTTTTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCT
TATTGACGGCGTCTTTCGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCC
TATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAG
GAATTTTTCCCCTGTGTTTTTTTCTTCAAGGCTTTTCCCCACTTTCTCCT
CTATAAGGTTCAGTGTCTCTGGCTTTATGTGAAGTTCCTTGATCTACTTA
GATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATGCGCATTCTTCT
ACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTT
TCTTCCACTGGATGGTTTTAGCTCCCTTGTTGAAGATCAAGTGACCATAG
GTGTGTGGTTTCATTTCTTGGGTCTTCAATTCTATTCCATTTGTTCTCCT
GGGTCTGTCTCTATACCAGTACCATGTCAGTTTTTATTACCATCTGCCTC
TGGTATTTATAGCTTTATTTCTTTTTTGGTAGATTCTACCCTCAAGATCT
TTTTATTCTTTGCACCCCCCCTCTTGGTTATTCCTACCGTTTTTTCGTTT
ATTACTTGATTCCTCCTCTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGGCCAGCTTGGTCTGTATAGAGAGTTTTA
TGCTAGCCAGGACTGCATAGTGAGACCCAGTTTGAAAAGAAAAGGAAATA
ATCAAGAGCTTAGTTTTGTATATGTTTGTGAAAGAAGAGGTAGATAAATT
AATTTGGTTAAGTTTATGCGCGAAGGGAAATATAAAAAAGATAATCTCTG
AAGGTCTACTGTTATTGTGGGAGTGGGTCAAAAGATGTATGTTAATTGGT
ACCCTTAAATAAGTTCTAATTTGTTTTTTAAATTGTTGAAGGTGCATCTG
ATGTAGGATGAGATCATACTGAATGAGAGTGAGCTCTGGACTTCAATGGT
GTGAGCTTGTACTTATGCCCCTGGGGTGAATCAAGCATTCTCTCAGTATC
TACCCCTAGAATCTCCTGTTCCCCTAGTCCCATAATTGTGCTTTGTTTTG
ACGAGAATTTTTTACTTCTTCACCTATTTTCGTTTTTGTATATTTTTACC
TTATTTTTTTTTTGCGTCTTAATCTTTGTTTATTTCGTTCACTTGTTATA
TTTTTTCTTTTTCCTTCATCTATGTTTTTTTTTTCCCCTTTTTTCCCTTC
TTTTTTTTTTTTTCTTCTTATTTTCATTTTTTTTTCTTTCTTTCCCCCTT
CGTTCTTTCCTTTCCCTTGCTCATTTGCCCTCTCCATTCTCTCTTTGTCT
CTCCCACATTCTTATTTCCTTTCCTCCTTGCTCTCTCTTATTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_k01.g1 MSMg01no438_k01.g1 CHROMAT_FILE:
MSMg01no438_k01.g1 PHD_FILE: MSMg01no438_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:28 2005
         (253 letters)



>mm_chr1_19245031_19245683
          Length = 653

 Score =  482 bits (249), Expect = e-140
 Identities = 252/253 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagcttggtctgtatagagagttttatgctagccaggactgcatagtgagaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccagcttggtctgtatagagagttttatgctagccaggactgcatagtgagaccca 260

                                                                       
Query: 61  gtttgaaaagaaaaggaaataatcaagagcttagttttgtatatgtttgtgaaagaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttgaaaagaaaaggaaataatcaagagcttagttttgtatatgtttgtgaaagaagag 320

                                                                       
Query: 121 gtagataaattaatttggttaagtttatgcgcgaagggaaatataaaaaagataatctct 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gtagataaattaatttggttaagtttatgtgcgaagggaaatataaaaaagataatctct 380

                                                                       
Query: 181 gaaggtctactgttattgtgggagtgggtcaaaagatgtatgttaattggtacccttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaggtctactgttattgtgggagtgggtcaaaagatgtatgttaattggtacccttaaa 440

                        
Query: 241 taagttctaattt 253
           |||||||||||||
Sbjct: 441 taagttctaattt 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)