BAC Information

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BAC

Clone NameMSMg01-438M07
Chromosome1 (Build37)
Map Location 98,358,350 - 98,358,601
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438M07.T7 (MSMg01no438_m07.b1)MSMg01-438M07.TJ (MSMg01no438_m07.g1)
ACCAG529283AG529284
length758756
length of high quality
(start - end)
252 (66 - 317)452 (75 - 526)
definitionCHROMAT_FILE: MSMg01no438_m07.b1 PHD_FILE: MSMg01no438_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:40 2005CHROMAT_FILE: MSMg01no438_m07.g1 PHD_FILE: MSMg01no438_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCAT
TTCCTGTATCTAATTCACCATTACTTGCCCAACTTATTGCAATCTTGTCA
TTTCCATCCGCAGTGTGTTCTCTGAAACAGAATAAATCTGTTTAGAAGGA
TGTATTATAATTTTCAATTGTCATAGTTCCATTCATTTATTCTACATATC
CAACAGGCATTGCCTTCTATATTTTGACAGCTTCAGTTCCACTGAAATAT
TCATAATGTTCCCAGCCTCAAGCAGTATATTCTTTAGAAGCTTCTGTAAA
TCCAGAATGCATCAAGAGTTATTAGGCATTTCAAGTTATTTCAACTACTT
TGCATTGAACAAAAAACACCGTTTATCAAATTAAAGGGAGGCTGTCAGAG
GCAAAATAGAGCAATGGGGTTCTCTGAAGAAAAAAATAACTAATATTTCA
TCTATAGAATAACATTTTATGAAGCTTTTATTCTTATATTTTTCAAGAAG
GCAATGAAATATAGCTATTTTTGAAGTCCACGAGAACTATATTAACCTTC
TAATTTACTTAATTTCTTGGTAAATAAATTCATCTTGGCTCTTTTGATTG
TATTTTATTTGATATGTTGGGCATTTTTGATGCTTTATGCAAGGACAGTA
TACAGTTACTTTTCTTCTTTCATTATGCATTTATATAAAAATCTGTCTAA
TTCAAATTCATATGTCTTTTTTCCCCATTCCAGGGACCTAATTTCACTTA
TTATTGCT
GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTAAGATTGTAAAAGCTAAGTCACT
CCCTTACACAGGAATTTACCATCACTAAGGAAGAAGGAAGTTTCAGACCA
AAGGAGAAACTAGAAACAATAGCAGAGTTACACCCATACACACATATTTA
CAATGGCCTAAGGGGAAGGTGGACTATACAAGAGACTAAAATAGGAACTA
TGGCAAGGGCGCGAAGCCCTTGACCCTGGTTTCTAAGATTAGTGAATCTT
AGGTGGAGCCCTTGTTGATCCCATGCTGTTATCAATGTATTCTATCCCAG
GTGGTTCCCGTTAGACCTTTTGTGTTTGTATTCCTCTGTGTTATGTAAGA
TTCCGGTTACCTCAATTGTGCCGTGCGAATATGTCACCCAACTTCCTTAT
TGTCCTCTGCATAAAAAGTCTGATGCTCGATTCGAAAATTACACTCAGAT
TCCACACAACCTCTCCTGTGTGTGTCTGCTTGTCATTCATCCACGCTTTG
TCCACCCGAATTGAGAGACCCATTCATTGCAGACCCTGGGAACTTGAGGA
ATCTTGGCATCACCTTCATTAAAAGGCAAGAGAAACTTGGCTTTTAAATC
CCCTTTTTTCTTTGTTGGCGGGGGCTAGTTTTAATCTCGTTCTTATTTTC
AGCTACTTGTTCAACTTGTCTCCTCTCGTTTTTTTACTCTCTTTCCCTCC
TTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_m07.b1 MSMg01no438_m07.b1 CHROMAT_FILE:
MSMg01no438_m07.b1 PHD_FILE: MSMg01no438_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:40 2005
         (252 letters)



>mm_chr1_98358150_98358801
          Length = 652

 Score =  487 bits (252), Expect = e-142
 Identities = 252/252 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccattacttgcccaacttattgcaatcttgtcatttccatccgcagtgtgttctctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccattacttgcccaacttattgcaatcttgtcatttccatccgcagtgtgttctctga 260

                                                                       
Query: 61  aacagaataaatctgtttagaaggatgtattataattttcaattgtcatagttccattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagaataaatctgtttagaaggatgtattataattttcaattgtcatagttccattca 320

                                                                       
Query: 121 tttattctacatatccaacaggcattgccttctatattttgacagcttcagttccactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttattctacatatccaacaggcattgccttctatattttgacagcttcagttccactga 380

                                                                       
Query: 181 aatattcataatgttcccagcctcaagcagtatattctttagaagcttctgtaaatccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatattcataatgttcccagcctcaagcagtatattctttagaagcttctgtaaatccag 440

                       
Query: 241 aatgcatcaaga 252
           ||||||||||||
Sbjct: 441 aatgcatcaaga 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)