BAC Information

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BAC

Clone NameMSMg01-438O21
Chromosome1 (Build37)
Map Location 28,643,398 - 28,643,896
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040952, EG433281, EG665903
Downstream geneGm597, LOC435614, EG623924, EG433283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438O21.T7 (MSMg01no438_o21.b1)MSMg01-438O21.TJ (MSMg01no438_o21.g1)
ACCAG529407AG529408
length765767
length of high quality
(start - end)		502 (45 - 546)404 (75 - 478)
definitionCHROMAT_FILE: MSMg01no438_o21.b1 PHD_FILE: MSMg01no438_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:53 2005CHROMAT_FILE: MSMg01no438_o21.g1 PHD_FILE: MSMg01no438_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCCTGGTAATTTCCATTATTGAGAATGTCAGTTCATCTACATTATAT
TTCTTTCACTTACTAACCCTGACCCAAACCATTTTCAGTATCATTCTACA
TTTCAACTTGTACAAATGACAGTTTGTTTCTAGACCATGCTTTATAAATC
CCTGCTATTCTAGACTCTCCTCTGGCTTTTGGTGACTGAATTGTAAAGGA
GAGTCATTGGGTTCAATATAAATGATAAGAACTTACAGAGAACTGAAGTG
AAGCCTCCAGAGTCTTGGTATTAGTTTCGTACTCAAATTATATAGCATGA
TAGTTCCACACTATAGAAAATTTAAATATATGTGTGATGCCCTTTGATCT
TTCATGCTTTATCTAAGAAGCGTATTTCAGTTTTCTTTTTAAATTTTTTA
TTAGGTATTTTCCTTATTTACATTTCCAATGCTATCCCAAAAGTCCCCCA
TACCCTCCCCCCCACTCACCTACCCACCCACTCCCACTTTTTGGNCCTGG
CGTTCCCCTGTACTGGGGCATATAAAGTTTGAAGTCCAATGGAACTCTCT
TTTCAGTGATGGGTGACTAGGCCATCTTTTGAACATATGCCGCTAGAGCC
AAAACTCCGGGGAACCGGTTAATTCAAAAAGGTGGTTCCCCCAAAGGGGT
GGGGAACACCTTTAATCCTTTGGGACTTTTTCCTAACCCCCCCCTGGGGG
CCCGGGAACAACAAA

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTGAAGACCCAGAAATAAATCCAC
ATAATTATGGACACTTGATTTTCGAGGAAAAACAAAACAAAACAAAACAA
ACAAACAAAAAACCAAAAAAAAAAAAAAACCAAAAAACTTAAACCAAAGA
AAGCCTCACAGAAGTGGAAGCTAAGTTCTTATTTCTGAAGACCATGTGAG
TTAAAGATACTTCCCAGAGGTTCCTGGCCTAGAATAGATTTGCCTGTCAG
CGTACTACCCGAGGATTTTCTTTCATAGTACCAGATTGTTTAATGGAAGC
CTCCAAAGGAGGGATACCACTAAAAGTCCCACAGATGACACCTATGAACT
ACAACAATGGTGATCCTGGCACAACTCAATAGTTCAGTAGTGGCATGCAT
ATATGGTGTGTGTGTGTGTGTGTGTGTNTNTNNNNNNNNNNNNNNNNTTT
TNTTTTTTTTNTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTNTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTNNTTTTTTTTTNTTTT
TTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTNTTNTTTTTTTTTTTTTTTTTTTTTTTTTTNNNTTTNTTTTTTTT
TNNNTTTTTTTNTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_o21.b1 MSMg01no438_o21.b1 CHROMAT_FILE:
MSMg01no438_o21.b1 PHD_FILE: MSMg01no438_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:53 2005
         (502 letters)



>mm_chr1_28643309_28644211
          Length = 903

 Score =  818 bits (423), Expect = 0.0
 Identities = 479/499 (95%), Gaps = 4/499 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcctggtaatttc-cattattgagaatgtcagttcatctacattatatttctttca 64
           ||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||
Sbjct: 588 gaattcctggtaatttcacattattgagaatgtcagttcatctaaaatatatttctttca 529

                                                                       
Query: 65  cttactaaccctgacccaaaccattttcagtatcattctacatttcaacttgtacaaatg 124
           |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 528 cttactaaccctcacccaaaccatttttagtatcattctacatttcaacttatacaaatg 469

                                                                       
Query: 125 acagtttgtttctagaccatgctttataaatccctgctattctagactctcctctggctt 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 468 acagtttgtttctagaccatgccttataaatccctgctattctagactctcctctggctt 409

                                                                       
Query: 185 ttggtgactgaattgtaaaggagagtcattgggttcaatataaatgataagaacttacag 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 408 ttggtgactgaattgtaaaggagagtcattgggttcagtataaatgataagaacttacag 349

                                                                       
Query: 245 agaactgaagtgaagcctccagagtcttggtattagtttcgtactcaaattatatagcat 304
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 348 agaactgaagtgaagcctccagagtcttggtattagttttggactcaaattatatagcat 289

                                                                       
Query: 305 gatagttccacactatagaaaatttaaatatatgtgtgatgccctttgatctttcatgct 364
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gatagttccatactatagaaaatttaaatatatgtgtgatgccctttgatctttcatgct 229

                                                                       
Query: 365 ttatctaagaagcgtatttcagttttctttttaaattttttattaggtattttccttatt 424
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ttatctaagaagcatatttcagttttctttttaaattttttattaggtattttccttatt 169

                                                                       
Query: 425 tacatttccaatgctatcccaaaagtcccccataccctccc---ccccactcacctaccc 481
           ||||||||||||||||||||||||||| ||||||||| |||   |||||||| ||| |||
Sbjct: 168 tacatttccaatgctatcccaaaagtctcccatacccacccaccccccactcccctgccc 109

                              
Query: 482 acccactcccactttttgg 500
           |||||||||| ||||||||
Sbjct: 108 acccactccccctttttgg 90


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space:   439356
Effective search space used:   439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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