BAC Information

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BAC

Clone NameMSMg01-439C01
Chromosome1 (Build37)
Map Location 66,734,070 - 66,734,318
singlet/doubletsinglet
Overlap genenone
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik
Downstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439C01.T7 (MSMg01no439_c01.b1)MSMg01-439C01.TJ (MSMg01no439_c01.g1)
ACCAG529559AG529560
length722725
length of high quality
(start - end)
552 (73 - 624)249 (69 - 317)
definitionCHROMAT_FILE: MSMg01no439_c01.b1 PHD_FILE: MSMg01no439_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:09 2005CHROMAT_FILE: MSMg01no439_c01.g1 PHD_FILE: MSMg01no439_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCTGCTCTAGAACCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCT
GTTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATAAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTATCACGCGGCTTTTATCACTATTGCCC
TGTACTAAAGCTTTAGGCTACGTTTGGCGATTCCTTCATAGGTTCTTTGA
TCCCTGAGACCGCTTTTGCTAN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXNATGCTGGAATTCTTGTGCAGAAAAGTAAGAAAGCCTGCCAA
CAAAATATCTAAAAACGTGCCATTTACTAAAATCCCCTCTTTAGTAAATG
CCTAGATTTCCTCTGCTCCAAAGAGAGCTTGCTAACACAATGCCATGCAG
CATATAGCAGAGATGGATGTGCTCCTGGCTGGTGGGACACCGCCACATTA
ATGAAATTGTTTCAAAACCCACAGCAATTTGTTCACATTTCTTCCTGACG
ATGGCTGCGCTTGGTGACTTTTTTCAAGGACCAGAGGGGAAGAGCAAGAG
CAACAACAACACCAGACCAACAGCACCTGGTTTAAGATGCTCATCAAAAT
GCTGACATGATTGATTCCTCCCAAGACGAGCTCTCTGACTCTGGCTCTGA
ACTCGCCCTCGAACCTAGCACAGACATCGAGCTTTCTCCCTGTGCACTGG
ATGCAGCGCAGACTGAATCAGCTCAATAGCTCCAGTTTGAATCCTCAGCT
CACTAGAGGAGGCCAAGTCCTTTGGAGAATTAATAAAAATAAACTCTGCC
CCTGACTCCTCTTGAACACACTGGACGGCGGCTTACATTAGCAGAAGCAG
AACCTGGACTAATTAGAACGCTCTCCGCACAAAGCTATCGAAATCCAAAC
CTGACTAATGTTTTCTACCCTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_c01.g1 MSMg01no439_c01.g1 CHROMAT_FILE:
MSMg01no439_c01.g1 PHD_FILE: MSMg01no439_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:09 2005
         (249 letters)



>mm_chr1_66733870_66734518
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttgtgcagaaaagtaagaaagcctgccaacaaaatatctaaaaacgtgccatttact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttcttgtgcagaaaagtaagaaagcctgccaacaaaatatctaaaaacgtgccatttact 390

                                                                       
Query: 61  aaaatcccctctttagtaaatgcctagatttcctctgctccaaagagagcttgctaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaaatcccctctttagtaaatgcctagatttcctctgctccaaagagagcttgctaacac 330

                                                                       
Query: 121 aatgccatgcagcatatagcagagatggatgtgctcctggctggtgggacaccgccacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aatgccatgcagcatatagcagagatggatgtgctcctggctggtgggacaccgccacat 270

                                                                       
Query: 181 taatgaaattgtttcaaaacccacagcaatttgttcacatttcttcctgacgatggctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 taatgaaattgtttcaaaacccacagcaatttgttcacatttcttcctgacgatggctgc 210

                    
Query: 241 gcttggtga 249
           |||||||||
Sbjct: 209 gcttggtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)