BAC Information

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BAC

Clone NameMSMg01-439C18
Chromosome1 (Build37)
Map Location 83,233,295 - 83,233,874
singlet/doubletsinglet
Overlap genenone
Upstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614
Downstream gene4930544G21Rik, EG622958, 5033414K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439C18.T7 (MSMg01no439_c18.b1)MSMg01-439C18.TJ (MSMg01no439_c18.g1)
ACCAG529592AG529593
length732768
length of high quality
(start - end)
579 (47 - 625)140 (322 - 461)
definitionCHROMAT_FILE: MSMg01no439_c18.b1 PHD_FILE: MSMg01no439_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:13 2005CHROMAT_FILE: MSMg01no439_c18.g1 PHD_FILE: MSMg01no439_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAATTC
TGAACTCTGTACCTATTTATTTGAGGACAGAAACTGTTAATGTGGATTTG
AGAAAACATTTCCGTGACAGATTCTCAGCCATACAGCCAGCACTGCTGAC
GCCAGAATTCCCACGCCGCTTGACAGGGAAAGGAGCTTATTGCAGTGTAT
AGCATACAGACTTTATAAATCTTTTATGCTTTTAAAGGGAAATTAAGCAA
CCATTCTGGAGATTTAGCCTCCTCCAGATCCCAAATCCCTCTGCATTGAC
AGTTCACCAGTATTTCTTATGAAGAACAGTGGCTCCTATGCTATTTCAAC
TTTCGTCAATTATCCGAGTAAAGGAAAATCTGTGTTATAGCCTGCAATTT
AGTGATCTTCATCTGGAAATAAAACAGAAATCATGACTATTTTGCACATG
CTCCTTCTGTTGATATTAGTATGAGCAAAAGAAAATCTATAGTTAGGCTC
AGGAAAAAGAAATATCATTGTGCTGAATTTTCCAATCTGACATAAGATAA
CCTCTAAGGGCCCTGTGAGGACAGCCTCATGCTTATAAGATTAACCTTCT
GCTTAACTAAGATTTCACTTGCATGCCACCTTAAATGCTAAGCANATAGC
CACTATGCATTACTGTAGCTAAATATCCTACGCAAAATAAAGCTATATCA
CAATCACTGCTTTCCCCAAGAAGCCATTCCTG
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACTTGGGAATGCTACAACTGCTTTTCCTCTGCA
TTTTATGAATCGTATTCCTGCTCTTGGATTAGATAGGCACCATACTTTTT
CACTCCCAAATGAATACTCCAAGGGTTTCCAAGATAGTAATGCTAAAAAT
AGCATTGCTATTGTGACACACTGACTCAAGAAGGAAGTAAACAAAGTCTT
GGAAAATTCTCCATGGAAACTAGGCTAAAAATAAAGGGGGATCAGTATAA
AAGGGGGTTCCCTTTTTTATAGAGGGCATCACACTGTTCTCTCCTCTCCT
GAGTCTCTCTCCTCACTGCACCTGAATCCTCTTTACTGACACCATGGGTT
GCTGTGGCTGTGGAGGCTGCGGAGGCTGCGGCGGCTGTGGCTGTGGCTGT
GGAGGCTGCGGCGTCTGCGGCTGTGGCTGTGCAGGCTGCGTAGGTTGCCC
CGTTTGTGTTGGCTGTGTTTGCGTCGTCTGCTTCGCCTGTGTCCGCGTCG
CCTGTGCCCGTTTTGTCTGCCTTTTCCTTGTCTTGTTTCCGTCTGCATTT
CGTCTCTCCCCGTTTTTTCTGCTTCCCCCTCTTTTTCTCCTGCTTTTTTC
TCCCTTTGCATATACTTGGTCCACCTTTTCCGTTTCCCCTCGTCTTTTTC
CCCTCACTTTTTTCTCTCTCCACCCTCTCTTTCCTCCCACTCTTTAACAT
TTTCTTCTTCCCTTACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_c18.b1 MSMg01no439_c18.b1 CHROMAT_FILE:
MSMg01no439_c18.b1 PHD_FILE: MSMg01no439_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:13 2005
         (579 letters)



>mm_chr1_83233095_83234074
          Length = 980

 Score = 1083 bits (560), Expect = 0.0
 Identities = 575/580 (99%), Gaps = 1/580 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctgaactctg-tacctatttatttgaggacagaaactgttaatgtggatttgagaaa 59
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 attctgaactctgagaactatttatttgaggacagaaactgttaatgtggatttgagaaa 721

                                                                       
Query: 60  acatttccgtgacagattctcagccatacagccagcactgctgacgccagaattcccacg 119
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 720 acatttccgtgacagattctcagccatacagccagcactgctgatgccagaattcccacg 661

                                                                       
Query: 120 ccgcttgacagggaaaggagcttattgcagtgtatagcatacagactttataaatctttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ccgcttgacagggaaaggagcttattgcagtgtatagcatacagactttataaatctttt 601

                                                                       
Query: 180 atgcttttaaagggaaattaagcaaccattctggagatttagcctcctccagatcccaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atgcttttaaagggaaattaagcaaccattctggagatttagcctcctccagatcccaaa 541

                                                                       
Query: 240 tccctctgcattgacagttcaccagtatttcttatgaagaacagtggctcctatgctatt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tccctctgcattgacagttcaccagtatttcttatgaagaacagtggctcctatgctatt 481

                                                                       
Query: 300 tcaactttcgtcaattatccgagtaaaggaaaatctgtgttatagcctgcaatttagtga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tcaactttcgtcaattatccgagtaaaggaaaatctgtgttatagcctgcaatttagtga 421

                                                                       
Query: 360 tcttcatctggaaataaaacagaaatcatgactattttgcacatgctccttctgttgata 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tcttcatctggaaataaaacagaaatcatgactattttgcacatgctccttctgttgata 361

                                                                       
Query: 420 ttagtatgagcaaaagaaaatctatagttaggctcaggaaaaagaaatatcattgtgctg 479
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 360 ttagtatgagcaaaagaaaatctatagttaggctcagtaaaaagaaatatcattgtgctg 301

                                                                       
Query: 480 aattttccaatctgacataagataacctctaagggccctgtgaggacagcctcatgctta 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aattttccaatctgacataagataacctctaagggccctgtgaggacagcctcatgctta 241

                                                   
Query: 540 taagattaaccttctgcttaactaagatttcacttgcatg 579
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 taagattaaccttctgcttaactaagatttcacttgcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space:   551930
Effective search space used:   551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)