BAC Information

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BAC

Clone NameMSMg01-439G08
Chromosome1 (Build37)
Map Location 58,022,964 - 58,023,369
singlet/doubletsinglet
Overlap geneKctd18
Upstream geneSatb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik
Downstream geneSgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439G08.T7 (MSMg01no439_g08.b1)MSMg01-439G08.TJ (MSMg01no439_g08.g1)
ACCAG529759AG529760
length758861
length of high quality
(start - end)
425 (71 - 495)39 (71 - 109)
definitionCHROMAT_FILE: MSMg01no439_g08.b1 PHD_FILE: MSMg01no439_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:30 2005CHROMAT_FILE: MSMg01no439_g08.g1 PHD_FILE: MSMg01no439_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGAGAGAATCCGCGGA
ATTCCTTAATTCCCTCATGCCAAGGTTTTTTCTTTGTAATTCTGCTAAGT
TGTCTTAAGAAAAGTCTTTAATCATATGCAATGCTACCAAAGCATTTCTT
GTTCTTAAAAACCGTTTTAAACTGTTTATTTTGGAGATAGGATGTCCTAG
AGCTGCTCAGGCTGGCTTCCCCACTCATAGCAGTCCTCCTGCCTTCACCG
CGGGAGTGCTGGGACCTGTGGCTGTGTGTTACCACTCCTCACAGCGTGCC
TTCCTTCTTTAAAATGTATTATTCTCATACTCCAAAGGGACACTAACCCA
GTGCTTTCAAATGTAGTACACACCTAGCACTAGAAATCCCCGCATGTGTT
GTCGCTGACATTGAAACAGCTGACATATGGACAAGTACACACTCTCTTTA
CTGTGGAGCCACACATGCCTGTCCTGGTCCAGCTGTACTGAGGTAAGCCT
GAGTTTTTGCAGTTGGCTGTATTACGATGATAATGATGCCATCCGAAAAG
CCCACTGGGTTCCTGTATAACACTTTGCCACATCCTGTTTGAGAAAAATA
CATCTCCCCTCCCCCCACTATATTCCCCTTTCCCCCCCGTCTCACGCTAA
ATATATCTACCTGTCCATTCTATTCACTTTTTAGTTTCCTGTTTCCCTCC
TCCCCTTCCCCCCTTTTTCTTTTTCTTTTTTTCCCCGTTTATCTTTCTCT
CCCCTTTG
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGTCCCAGCGCCATTCCTCTAGGTAGCTATAAGACTACATTCCC
AGTGGATTCACATCTCAACTCCGTGTATTTGAGGGGGGATGGATAAGTGC
CCGAGTTTCCTCTCCCCCCCCTTCCCTTTCCTTTCCCCTCCCCTTTCCTT
TCTCTTCTCTCCCTCCCTTTCCCCTCCTCCCTTTTCTCTCCCCCTCCCCC
TTCTTTCTTCTTTCTCCCTCCCTTCCCTTCCTCTCTTCCTCCCCCCCCTC
CTTTCCCCCTTCCCCTCTTTCTCTTTTTTTCCTCCACTCATTCCCTCCCC
TCCCCCCCTTTCCTTCTTTTCCCCCCCCCTCTCTTTCCCCCTTTTTCCTC
CCCCCTTCTCCTCCCTTTTTTTTTTTCTTCCCTCCCCCCCCCTTCTCCCT
CTCCTTTTTCCTCTTTCTCCTTTTTCCCTCTCTCCTTCTTCCCCCCTCTT
TCCCCCCCCCCCCTTTTTTCTTTCTTCCCCTTCTTCCCCCCCTTTTCTTC
TCCTTCTCCTTCCCCTTCCTCCTCTTCTCCTTCCCCTTTCCCCCCTCTCC
TCCCCCTTCTCTCCCTCCCTTCCTCCTCCCTTTTCTCTCCTCCCCCTTTC
CTCTCTTTTCTCTTCTTTCACCTCCCCTTCATCCCTCTTCTCTCCCCCCC
TTCTTCTTCCCCCTTTCCCCCTCCCCTTCTCCTCCTCCCCTCTTTCCTCC
CCCTCCCTTCTTTTCTTTTCCCCCCCTCTTCCTTTTCTCTCCCCCTTTTC
CCCTTCCCTCTTTTCCTCTCCCCCCCTCCTCTTTCCTCCCTTTCCCTTTT
TCTCCCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_g08.b1 MSMg01no439_g08.b1 CHROMAT_FILE:
MSMg01no439_g08.b1 PHD_FILE: MSMg01no439_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:30 2005
         (425 letters)



>mm_chr1_58022546_58023369
          Length = 824

 Score =  741 bits (383), Expect = 0.0
 Identities = 401/407 (98%), Gaps = 1/407 (0%)
 Strand = Plus / Minus

                                                                       
Query: 19  attctgctaagttgtcttaagaaaagtctttaatcatatgcaatgctaccaaagcatttc 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 attctgctaagttgtcttaagaaaagtctttaatcatatgcaatgctaccaaagcatttc 765

                                                                       
Query: 79  ttgttcttaaaaaccgttttaaactgtttattttggagataggatgtcctagagctgctc 138
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 764 ttgttcttaaaaaccgttttaaactgtttattttggagataggacgtcctagagttgctc 705

                                                                       
Query: 139 aggctggcttccccactcatagcagtcctcctgccttcaccgcgggagtgctgggacctg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 aggctggcttccccactcatagcagtcctcctgccttcaccgcgggagtgctgggacctg 645

                                                                       
Query: 199 tggctgtgtgttaccactcctcacagcgtgccttccttctttaaaatgtattattctcat 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 644 tggctgtgtgttaccactcctcacagcgtgccttccttctttaaaatgta-gattctcat 586

                                                                       
Query: 259 actccaaagggacactaacccagtgctttcaaatgtagtacacacctagcactagaaatc 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 actccaaagggacactaacccagtgctttcaaatgtagtacacacctagcactagaaatc 526

                                                                       
Query: 319 cccgcatgtgttgtcgctgacattgaaacagctgacatatggacaagtacacactctctt 378
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 525 cccgcatgtgttgtcgctgacattgaaacagttgacatatggacaagtacacactctctt 466

                                                          
Query: 379 tactgtggagccacacatgcctgtcctggtccagctgtactgaggta 425
           |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 465 tactgtggagccacacatgcctgtcctggtccagctgtgctgaggta 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 824
Length adjustment: 9
Effective length of query: 416
Effective length of database: 815
Effective search space:   339040
Effective search space used:   339040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)