BAC Information

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BAC

Clone NameMSMg01-439G13
Chromosome1 (Build37)
Map Location 90,128,165 - 90,128,620
singlet/doubletsinglet
Overlap geneLOC100040766
Upstream geneEif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439G13.T7 (MSMg01no439_g13.b1)MSMg01-439G13.TJ (MSMg01no439_g13.g1)
ACCAG529769AG529770
length760750
length of high quality
(start - end)
456 (70 - 525)169 (71 - 239)
definitionCHROMAT_FILE: MSMg01no439_g13.b1 PHD_FILE: MSMg01no439_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:31 2005CHROMAT_FILE: MSMg01no439_g13.g1 PHD_FILE: MSMg01no439_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGTTCTACCAAGACATTCTGAACACTGTGTAGATGGAGGAGGGCTG
GGGCAGGTTTAGTAGGTAGTACACAGCTGGGAATGGATCCTGGTTGATGG
GGCTTGCTGGGGCTCTTAGTGAAGGAGAGAATTAATTCATCATTAGAAAC
GCACTGTGAGTCTAGAATCTGAGGAAATGTGGAGGGGTGCTCTCAGCTTG
AGTGGAGGTGCCAGGTTTGGAAAGAAGGATAGACCTAGACTCTGGAAGTC
TCCTATGGGATTCTCTCATGTCTGTGAGTCCTGTCTGCTGTCTTTCTCCA
TCCAAGAATAGAGAACACCGAGTCTTCTTCAAGAGTCACACATATGCCCT
TGAGCAGACATGCTCCCTGGCCAGGACCCTCCTGCCCTTTCTTTCCACAT
CAGCCTTCTCCCTGTCCTGTGGCTGTCTGTCCCTCCACTCCTCTGTAGCG
CCTCGATTCCCTGCTCCCTCTCACATCCTCCCCCTTCTCTTCTTTTCAGT
TCACCCTTTTTAACTTTGTGGCATCCCCACCCTATTTCCTGGCATATTAT
TTGAGGTGACAGGGTTTCCCGGGTAAACACCTGAGTTTTTATCGGCGCGG
TCCGCCTAGGTTTTTTTCTCCCTTACTTTTTCCCCACTAATAACATCTTC
CTTGAGGTCCTTGTTGTTCTCTCCCTTAGTCCCACTCGGGCGCCGGCAAT
CATGCTCTCA
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAAGGCCAAGAAGTGGGAGACACGAGCTCCGG
GGGTACTGGTTAGTTCATATTGTCATTCCACCTATAGGGTTGCAGACCCC
TTTAGCTCCTTGGGTACTTTCTCTAGCTCCTACATTGGGGGCCAAATTAT
GAGTTTCTTAGAACAACAATAGATACAGAATAAATAAAAGGATTTGAACA
TATATCTCTCCACATTATTCATACATCACCACTTTTCCTGCTATCTCTCT
TAAAAGATGACTCGATTCTTGCCAATATTACTGAATTAAGAAATGTCTCA
TTCTGCTTCCTCTGTGCTGCATTGGCAGCTGTCCCTTATCCCATCCCTTA
TAATATGTCTGGCGTCAGTCCTAAGAACTTTTCCTCGATTTTTGAAGTAT
CCTTGTTCTTGATCCCTGAACCACCACAATTTATATTCTGCTATGCTAGT
CAAAATGATAATTTGTGCAATTATTCTTAGATCCCCTACTCCTGATTTGA
TTGCCCCCGATGCCTCTTTTTTTCGGTGTAAATGGTACCTTTACCAGTCC
CCCTTTCCTATATCTCAGTTTTAATAACTGTCCGCGTTTTTTTTTTGTTT
TTTAGCTCCCCCCCTAGAACCTTGTTCCCTCCTCTACTCGAATTTTTGCC
CCTTGTTAACATCCTCCCCCCTTTTCTTTTTTTCTCCACGCTCTTCCCTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_g13.b1 MSMg01no439_g13.b1 CHROMAT_FILE:
MSMg01no439_g13.b1 PHD_FILE: MSMg01no439_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:31 2005
         (456 letters)



>mm_chr1_90127965_90128820
          Length = 856

 Score =  843 bits (436), Expect = 0.0
 Identities = 451/456 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgaacactgtgtagatggaggagggctggggcaggtttagtaggtagtacacagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgaacactgtgtagatggaggagggctggggcaggtttagtaggtagtacacagctg 260

                                                                       
Query: 61  ggaatggatcctggttgatggggcttgctggggctcttagtgaaggagagaattaattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ggaatggatcctggttgatggggcttgctggggctcttagtgaaggagagaattagttca 320

                                                                       
Query: 121 tcattagaaacgcactgtgagtctagaatctgaggaaatgtggaggggtgctctcagctt 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tcattagaaacgcactgtgagtctagaatctgaggaaatgtagaggggtgctctcagctt 380

                                                                       
Query: 181 gagtggaggtgccaggtttggaaagaaggatagacctagactctggaagtctcctatggg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 gagtggaggtgccaggtttggaaagaagaatagacctagactctggaagtctcctatggg 440

                                                                       
Query: 241 attctctcatgtctgtgagtcctgtctgctgtctttctccatccaagaatagagaacacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attctctcatgtctgtgagtcctgtctgctgtctttctccatccaagaatagagaacacc 500

                                                                       
Query: 301 gagtcttcttcaagagtcacacatatgcccttgagcagacatgctccctggccaggaccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtcttcttcaagagtcacacatatgcccttgagcagacatgctccctggccaggaccc 560

                                                                       
Query: 361 tcctgccctttctttccacatcagccttctccctgtcctgtggctgtctgtccctccact 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tcctgccctttctttccacatcagccttctccctgtcctgtggctctctgtccctccact 620

                                               
Query: 421 cctctgtagcgcctcgattccctgctccctctcaca 456
           |||||||||| |||||||||||||||||||||||||
Sbjct: 621 cctctgtagctcctcgattccctgctccctctcaca 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)