BAC Information

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BAC

Clone NameMSMg01-439H23
Chromosome1 (Build37)
Map Location 190,039,002 - 190,039,312
singlet/doubletsinglet
Overlap genenone
Upstream geneSpata17, Gpatch2, Esrrg, 9330162B11Rik
Downstream geneUsh2a, Kctd3, Kcnk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439H23.T7 (MSMg01no439_h23.b1)MSMg01-439H23.TJ (MSMg01no439_h23.g1)
ACCAG529836AG529837
length786746
length of high quality
(start - end)		132 (73 - 204)314 (69 - 382)
definitionCHROMAT_FILE: MSMg01no439_h23.b1 PHD_FILE: MSMg01no439_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:38 2005CHROMAT_FILE: MSMg01no439_h23.g1 PHD_FILE: MSMg01no439_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTATATATTCTCCAGCTACAACAAAAGCCTAAATCATAATGGATAT
GGTTACTATATATATATATATATATATATATATATATATATATATATATA
TATATACATATATATATATATATATGTATATTTATATATATATATATATA
TATAGAGAGGGAGAGTACCCTAAATAGCACGCTAGTGGTGAGGGTGTGGG
GGTATAGATGGGGGAGGGGGTAGACACTGAAGAGGGGGGGGCGTGAGCGG
GTGGGGGGGCGTGAGAGCGAGAGTTTTTTTGTGAGAGCGGGAGAGTCCTA
CGGTGTCAATCTTGGTTTTTGGCGTAGGGAGGGGCGGCGGAGCCCGTCGC
GGCACGGCTCTGGCCCCGCCCCGCCCCAGCCGCGCGTGGCGTTGGGGGTG
GGCCGGTCTGTCGGCGGGCCGCCCGTGCCGCTGGCGCCGAGCGGTCCGCG
CGCTTAGGGGTGGCGCGCGGGGGGGGGCCGGGGCTCGGCCGTGCCGCGGG
GTCCGTGTGCCCCCGGTGCCCGCCCCCCGGTTCTGCGTGCTGGCTCTCTG
TGCCCTTGAGCTCTCCGTCCGTGGCGCGTTGCGATTGTTCCGCCGCTCTG
CCCCCCCGTGGTTTGCCCGTTCTCTGCCCTTCGCTTGCTGGGCCTATTCT
TGTGGACTCCCTGCGCCGCCCGCGTCGCCGCGCTTCCGACCCCTCCCCCG
CGCTTTTCCGCGGCGCGGGCCGTGATTAGCGCTGGG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAAGACAGCCTCCTCCCCATGCATGGATCAGA
GGGCTCTGCCAAGAGTTCCCATTCAGGAGAGCTGGCCAGTGGCTGCTCTG
TGGACTCCCTCCACTGAAGCCGGGCACTCCTGAGCTCCATGTGTGCCAGC
CTGGGAACTTGATTTAATTGTCGATAGAAGGAAATAATAGATACCTCTCA
CAGGTTTTAATATGATCTTAAAATAGGGGAAAGTTTTCTGTTATGACATT
GACATAGAGGCGATGATTTTGAGTAATGCAGGATGATGTGGGGCTGCTTA
AGATTAAATATGAGCTATATAAAGGCCTGNCNGANNGNNNTCTNNNGNNN
CNNGNNNTNNCTCCCCCCCCCTTCCCTTTGTTTTTTGTTTTCTCGCCCTT
TTTTTTTTCTTTTCTCCCCTTTTTTTTTTTCCCTTTCCCTTTTCCCCCCT
TTTTTCCCCCTTTCCTCCTTCCTCCCTTCCCCCCCTCTCCCTTTTTCCTT
TTTTTCTCTTTTTTTTCCCCTTCCTTTTTTTTTCCTTCCTTTTTTTTTTT
TTTTTCCCCTTTTGCTCCTCCTTTTTCCTCCCTCCCCCCCTTTTCTTTTC
CTTTCCTTTCCCTTCCTTCTTCTTTCCCTCTTTCCCCCCCCTTTTCCTCC
CTTTTTTTCCCTCCTCTTTTTTCTCCCCTTTTTTTCCCTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_h23.g1 MSMg01no439_h23.g1 CHROMAT_FILE:
MSMg01no439_h23.g1 PHD_FILE: MSMg01no439_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:38 2005
         (314 letters)



>mm_chr1_190038802_190039515
          Length = 714

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagacagcctcctccccatgcatggatcagagggctctgccaagagttcccattcagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 caagacagcctcctccccatgcatggatcagagggctctgccaagagttcccattcagga 452

                                                                       
Query: 61  gagctggccagtggctgctctgtggactccctccactgaagccgggcactcctgagctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gagctggccagtggctgctctgtggactccctccactgaagccgggcactcctgagctcc 392

                                                                       
Query: 121 atgtgtgccagcctgggaacttgatttaattgtcgatagaaggaaataatagatacctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atgtgtgccagcctgggaacttgatttaattgtcgatagaaggaaataatagatacctct 332

                                                                       
Query: 181 cacaggttttaatatgatcttaaaataggggaaagttttctgttatgacattgacataga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cacaggttttaatatgatcttaaaataggggaaagttttctgttatgacattgacataga 272

                                                                       
Query: 241 ggcgatgattttgagtaatgcaggatgatgtggggctgcttaagattaaatatgagctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggcgatgattttgagtaatgcaggatgatgtggggctgcttaagattaaatatgagctat 212

                      
Query: 301 ataaaggcctg 311
           |||||||||||
Sbjct: 211 ataaaggcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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