Query= MSMg01no439_j21.b1 MSMg01no439_j21.b1 CHROMAT_FILE:
MSMg01no439_j21.b1 PHD_FILE: MSMg01no439_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:47 2005
(446 letters)
>mm_chr1_82320306_82321151
Length = 846
Score = 839 bits (434), Expect = 0.0
Identities = 440/442 (99%)
Strand = Plus / Minus
Query: 5 gaattccacatgaaatgccgtcaggctgctgggagacaggaaggacaaaaggcttcacag 64
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gaattccacatgaaaggctgtcaggctgctgggagacaggaaggacaaaaggcttcacag 587
Query: 65 ggactcattgctgcactagagagcggctggcccaggcgcagtaaacagaagcacaagatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ggactcattgctgcactagagagcggctggcccaggcgcagtaaacagaagcacaagatg 527
Query: 125 atggataacacaaggattcttaaccgtttcagaacataaaagttgtcaggggatgggggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 atggataacacaaggattcttaaccgtttcagaacataaaagttgtcaggggatgggggt 467
Query: 185 gttaacagacaagcttaggggaagaggaatggaccaatcctctctgacaaaattgtatct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gttaacagacaagcttaggggaagaggaatggaccaatcctctctgacaaaattgtatct 407
Query: 245 aatgttggcaatatcaatgcacacctgtacagggcagtacagttaagggcatggtcctca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aatgttggcaatatcaatgcacacctgtacagggcagtacagttaagggcatggtcctca 347
Query: 305 gcaggaattccacagcacactgaccaactggccttgggaaaactgtcaggctttcccctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gcaggaattccacagcacactgaccaactggccttgggaaaactgtcaggctttcccctg 287
Query: 365 taccaggataacaggctcatttgagtttggaaggaccaagtgagagatcaatcacacagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 taccaggataacaggctcatttgagtttggaaggaccaagtgagagatcaatcacacagc 227
Query: 425 acacaaccatcatttgagaagt 446
||||||||||||||||||||||
Sbjct: 226 acacaaccatcatttgagaagt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_j21.g1 MSMg01no439_j21.g1 CHROMAT_FILE:
MSMg01no439_j21.g1 PHD_FILE: MSMg01no439_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:47 2005
(484 letters)
>mm_chr1_82181549_82182432
Length = 884
Score = 866 bits (448), Expect = 0.0
Identities = 477/492 (96%), Gaps = 10/492 (2%)
Strand = Plus / Plus
Query: 1 attcccttgagttcccttcgaagcaaatgcaggaactgactccaggtgtaaaggatgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 attcccttgagttcccttcgaagcaaatgcaggaactgactccaggtgtaaaggatgggt 254
Query: 61 gcccataactcaaaaccaacaggaagcctagtatgtaagggagaaacgagagtggacaag 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 255 gcccataactcaaaaccaacaggaagcctagtatgtaagggagaaatgagagtggacaag 314
Query: 121 gaagcaaatcagaagccaagaaataaagcccttttcatggtaagagaaatctaaaaccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaagcaaatcagaagccaagaaataaagcccttttcatggtaagagaaatctaaaaccca 374
Query: 181 caggctgataaggaagggcctgaggctgccttcccaaagtgatgccaatgaggaaatgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 caggctgataaggaagggcctgaggctgccttcccaaagtgatgccaatgaggaaatgtg 434
Query: 241 attgttgtttttataggaagtacccccaaggcaggaaaaggtggagactgtgagaaatac 300
||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 attgttggattcagaggaagtacccccaaggcaggaaaaggtggagactgtgagaaatac 494
Query: 301 cccccctcccccccgtggatggagtgacctgagagtcagggctcctcagttaaccgtgca 360
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cccccc--ccccccgtggatggagtgacctgagagtcagggctcctcagttaaccgtgca 552
Query: 361 tttg--------atatcgcaaactccgtggctcttggctatccatttcatcttcccagac 412
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tttgtgcatttgatatcgcaaactccgtggctcttggctatccatttcatcttcccagac 612
Query: 413 cacgtttgcttcacacaacaaagacaacctgtgactgcagagaattattctatagctctg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cacgtttgcttcacacaacaaagacaacctgtgactgcagagaattattctatagctctg 672
Query: 473 atggagtcaggt 484
||||||||||||
Sbjct: 673 atggagtcaggt 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
