BAC Information

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BAC

Clone NameMSMg01-439N07
Chromosome1 (Build37)
Map Location 116,376,239 - 116,376,583
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439N07.T7 (MSMg01no439_n07.b1)MSMg01-439N07.TJ (MSMg01no439_n07.g1)
ACCAG530090AG530091
length785753
length of high quality
(start - end)
344 (47 - 390)241 (74 - 314)
definitionCHROMAT_FILE: MSMg01no439_n07.b1 PHD_FILE: MSMg01no439_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:04 2005CHROMAT_FILE: MSMg01no439_n07.g1 PHD_FILE: MSMg01no439_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCTCTCTTCTGTTATCTTTAGTATATTATCTTAATATACCTGA
CATTTTATTTATTCATCAGGTAAAAAGTACAAAGTAAATTAGTAATAAAT
TCTACTAGTAATTTACTCTTAATAAAAATTATGGAATAGTAGAATAGTCT
CTTCTTAAATTAAAACAAAAAATAAGATGTATATACTCTCTAATTGGATA
TTCATGGATTTTAATATGAAATTGTAGTTCTCTCTCTCTCTCTCTCTCTC
AGTGTGTGTGTGTGTGTGTGCATCTGTGTGTGTGCATCTGTGTGTGTGTG
TGTGCATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGTGTTTTGTTTT
TCTCCCCCTTTTCTTCTTCCCCCCCTCCCCTCTTTTTCCCTCTTCCTCCT
TCCTCCCTAGTTTTTCTTTCTTCCTTCCCTTCTTCTTATTTTTGTAATTG
TCGGTTTACTACTCCTATTTCTTTGTCCCTCTCTTTCTTTTCTTCCTCAT
TCCCCCTTCTTTTTTTTCCATTCCTTCTTCTTTTCTCCTTATTTTTCCTT
CGTACCCCCTATTTTTATATCTCCCTCTTTTCCNCCCCCCTTTTTACTGA
TTCTCTCCCCTATCTCTTTCCTCCTCCTTTCTTTTATCTACTCCCTTACT
CCGCTCTTTTTTTTCTTGCGTTATCCTATGTTTTCCCCATCTTCTTTTAC
TCCTCATCTATATTCCTATATATTTTCGCTTTCTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTAAGAAAGTTACCTATTCAGTAACT
AATTAAGCATCACAAAGGATGGAGCCACAGCTCAGAGCTGTTCTGCAGAG
TGTTTACTCAGGACAGCAACCAGCCTCATCAAAATAAAGGAATGCACAAT
TGGCCTAGCTAATAGGTGGGTTTACCATGAAAGAGCTAGGGAATCCCACT
GAGATAGAAATCTTTAGTACAGGCTACATTGCATATTAGAAGCTCGTTGG
TGAATTTTTCTGACTATTGGAGATTCTCCACAGATACTTAAAAGTTACAC
TCATACAGGAAATTATCAGGGCACAGGAAATAGGGGGGTTGTGGTATTGC
ATTATTCATGACAAGGCCCGCTACAGTATACCTCCTGCCGTCGGTCTTAT
CAACAGACTAGCTTTACACCTGGTCCCCCCCTTATCGCCCGTTTTCCGCC
CTTTCGCCCTATCTTGATTGCTACCTTCCCCCTTTTACCGTTGTCCTGAT
TTTTAACCGTTGCATTTTTTTCCGTCCTCTTCTTTATCTTTTTCCATTTT
TAAGCTCCGTTTGCTCCATCTCTCCCTCCTTTCTCTTAACATTTCTTTTC
TTCTTCTTTCACGTTTCCACTTTTTCGCCCCCCTTTTTTCCTCCTTTTGT
TTCCTCCCTACCTTTTTTTTCCCTCCCTCTTTTTTTTTCTCACCCTCCCC
CTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_n07.b1 MSMg01no439_n07.b1 CHROMAT_FILE:
MSMg01no439_n07.b1 PHD_FILE: MSMg01no439_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:04 2005
         (344 letters)



>mm_chr1_116376036_116376777
          Length = 742

 Score =  543 bits (281), Expect = e-159
 Identities = 325/353 (92%), Gaps = 24/353 (6%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacctctcttctgttatctttagtatattatcttaatatacctgacattttatt 63
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacctctcatatgttatctttagtatattatcttaatatacctgacattttatt 263

                                                                       
Query: 64  tattcatcaggtaaaaagtacaaagtaaattagtaataaattctactagtaatttactct 123
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattcatcaggtaaaaagtaaaaagtaaattagtaataaattctactagtaatttactct 323

                                                                       
Query: 124 taataaaaattatggaatagtagaatagtctcttcttaaattaaaacaaaaaataagatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taataaaaattatggaatagtagaatagtctcttcttaaattaaaacaaaaaataagatg 383

                                                                       
Query: 184 tatatactctctaattggatattcatggattttaatatgaaattgtagttctctctctct 243
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tata--ctctctaattggatattcatggattttaatatgaaattgtagttctctctctct 441

                                                                       
Query: 244 ctctctctctc----------------agtgtgtgtgtgtgtgtgtgcatctgtgtgtgt 287
           |||||||||||                ||||||||||||||||||||  | |||||||||
Sbjct: 442 ctctctctctctctctctctctctctcagtgtgtgtgtgtgtgtgtg--tgtgtgtgtgt 499

                                                                
Query: 288 gcatctgtgtgtgtgtgtgtgcatctgtgtgtgtgtgtgtgtgtgtgtgtgtg 340
           |||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 500 gcatctgtgtgtgtgtgtgtg----tgtgtgtgtgtgtgtgtgtgtgtgtgtg 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 742
Length adjustment: 9
Effective length of query: 335
Effective length of database: 733
Effective search space:   245555
Effective search space used:   245555
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)