BAC Information

Click to search

BAC

Clone NameMSMg01-439O12
Chromosome1 (Build37)
Map Location 164,110,901 - 164,111,364
singlet/doubletsinglet
Overlap geneDnm3
Upstream geneEG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, LOC100039703
Downstream geneDnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439O12.T7 (MSMg01no439_o12.b1)MSMg01-439O12.TJ (MSMg01no439_o12.g1)
ACCAG530148AG530149
length749729
length of high quality
(start - end)
472 (67 - 538)466 (67 - 532)
definitionCHROMAT_FILE: MSMg01no439_o12.b1 PHD_FILE: MSMg01no439_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:09 2005CHROMAT_FILE: MSMg01no439_o12.g1 PHD_FILE: MSMg01no439_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGAGACATCCGCGGAATTC
TTTAACTTGCCTGTAAGTCTTATCCTTATACCCTCAAATAAGTATAATTA
TCACCACATATCAAAGAAATGTCCCTGAACAGCAAATAGAGACTATTACA
AAACAACAGCAAAAACCCACAACTGGATAAAATGCAAAGATCAGTAGATT
ATGGGGAGCCCAGCCCCAACAGATACCTGCATAGCACAGCATCTTCAGTG
ATGGCAAAGGAAGCAATATAGAATGGGTGGAAAGAGTCTGGGAGCTCTAC
TGTGTGTCTGTCTCTCATAAAGGGCTGTCTAAACAAGACTGGAACAATGA
CAATATCAGCAGACATGCTAATGTGGAGGTGGGGCATCTCACAAGGTCTT
ACTCTCAGACAACAGCAGGAAACTACTGACTACCTAGAGAGGACAATTGG
CCTCTTCCGGAGATGAGCCTGATTGGCTTATCTAATATAAACTAGTCAGC
CCTGAAGCTTAATGCACACAAACAACAAAAATGGACTTAGAGGGCCATAT
CTATATATTTGTCTGTCTGTCTCTGTGTATAACAATAATCAAGAAAAAGA
GGCTGCCAATTTGAGGCGTATAGCATGTCAACAGTTTGCACATATTGACG
CTTGTTATAATTCTCGCAATAGGTTACCGTATAATTGCTACTTCCCCTCC
CTCCTTCCCCTGTTCATATTCATTCTTCCCCTTTTCCTCCCCCCCCTTN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCGCGAAATTCTGTAATTGCTTGGCTATTTTAGGAGGTTCTAG
TGTAAATATATTGCACACACTACATTATAGCTAGATAAGAAAGACTGCTA
AGTAATTTAATCAAGTTAACTAAGTTGATTTTATAGCTTGTTTTGAAACT
GGAAATAAAATAATGTAGAGAGGTTTATTGATTAGTTCCACTATGACAAT
AAGCTTTCAGAAATGACTAAGACATATTTAGACTCCTTTTTCCCCTCCAT
CTAAGGATANTTGGTCCCTCCTTAAATAAAAAAAAAATCATCCTTTAATT
CCAAGCAGTCTTATTGTAAACAGTTGTTAGATTTTTACATTGTTTTATAA
ATGGCTTTGCTGCTTAATACACTTTAATAGTTTAAAGAAAGAAAAAAAAA
ACGAGAACACCAGAAGAGGCAAGAAACTAAGTATCATTAATCAGTAGGGA
CAATAAAAATAGGAATGGACAGAGATGCGACTTAGGTTCACTTTTCTGGG
AGGATTCCAGAATTTGAGGCCTTCTGCATGCTCGGTGTCTAAGGGGAGCA
AGCGCTGCCGACTTTTGAAGTCGCCCTTGCTTACTACCCTTTTTACCTCA
CAGTGCATAGCGCACAACTATTCCTTTCTTTGCCTGCTATATCTTCCCAG
AACTGTGCCACATTTCATTCACACATACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_o12.g1 MSMg01no439_o12.g1 CHROMAT_FILE:
MSMg01no439_o12.g1 PHD_FILE: MSMg01no439_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:09 2005
         (466 letters)



>mm_chr1_164110701_164111564
          Length = 864

 Score =  857 bits (443), Expect = 0.0
 Identities = 460/466 (98%), Gaps = 2/466 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtaattgcttggctattttaggaggttctagtgtaaatatattgcacacactacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 664 tctgtaattgcttggctattttaggaggttctagtgtaaatatattgcaaacactacatt 605

                                                                       
Query: 61  atagctagataagaaagactgctaagtaatttaatcaagttaactaagttgattttatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atagctagataagaaagactgctaagtaatttaatcaagttaactaagttgattttatag 545

                                                                       
Query: 121 cttgttttgaaactggaaataaaataatgtagagaggtttattgattagttccactatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cttgttttgaaactggaaataaaataatgtagagaggtttattgattagttccactatga 485

                                                                       
Query: 181 caataagctttcagaaatgactaagacatatttagactcctttttcccctccatctaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 caataagctttcagaaatgactaagacatatttagactcctttttcccctccatctaagg 425

                                                                       
Query: 241 atanttggtccctccttaaataaaaaaaaaatcatcctttaattccaagcagtcttattg 300
           | | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 424 a-atttggcccctccttaaat-aaaaaaaaatcatcctttaattccaagcagtcttattg 367

                                                                       
Query: 301 taaacagttgttagatttttacattgttttataaatggctttgctgcttaatacacttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 taaacagttgttagatttttacattgttttataaatggctttgctgcttaatacacttta 307

                                                                       
Query: 361 atagtttaaagaaagaaaaaaaaaacgagaacaccagaagaggcaagaaactaagtatca 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 306 atagtttaaagaaagaaaaaaaaaacgagaaaaccagaagaggcaagaaactaagtatca 247

                                                         
Query: 421 ttaatcagtagggacaataaaaataggaatggacagagatgcgact 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttaatcagtagggacaataaaaataggaatggacagagatgcgact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 864
Length adjustment: 10
Effective length of query: 456
Effective length of database: 854
Effective search space:   389424
Effective search space used:   389424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)