BAC Information

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BAC

Clone NameMSMg01-440E23
Chromosome1 (Build37)
Map Location 92,954,816 - 92,955,263
singlet/doubletsinglet
Overlap geneLrrfip1
Upstream geneIqca, Cxcr7, Cops8, Col6a3, Mlph, Prlh, Rab17
Downstream geneGm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440E23.T7 (MSMg01no440_e23.b1)MSMg01-440E23.TJ (MSMg01no440_e23.g1)
ACCAG530457AG530458
length766785
length of high quality
(start - end)		452 (53 - 504)374 (83 - 456)
definitionCHROMAT_FILE: MSMg01no440_e23.b1 PHD_FILE: MSMg01no440_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:43 2005CHROMAT_FILE: MSMg01no440_e23.g1 PHD_FILE: MSMg01no440_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTTTTTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGG
ATCCGCGGAATTCCTTCTTTTATGGCTCTTCCGACCAGGGTTTCCCTCTG
TAGCCTTGGCTGTCCGGGAACTCACGTCTGTAGCCCAGGCTGACCTTGAA
TTCCTGGAGATCCACCTGCTTCTGCCTCCCGAGTGCTGGGACCAAAAGCA
TGTGACAGCACGGCCCAGCCGAGTTGCTTCTTTATTACAAAGTGGCCATA
CTTTAGATTTCAGGGAAATAAACCAACCACGGAATGCACACTGGCAAGGA
GAGCGTTTAATTGTTTTTGTGTTGTCTCTGCCTTTATCAGCTGTTCTGGA
ATTTGCTCCTGGGGCAAGTGACTACTGCAGTGGTCAGCAATCACCTGGCA
ATCCTGAGTTACTTCTTGGGTGTAGTCACACTAATGCTGGGTTTAATCTG
AGAGACAGATGTAAATCCACTTAACTATATAGCTACTATTGCAATAAGTC
CAATAAGCCCATCCTATGAAGGTAAGCGAACTTCTGTAATACACAAGCCA
GAACTGCTGGTCCCTGTTAAAAGCAGTCAGGTAATAAAGCCCTCCCTTTT
CCCCAGCTGATGAACAGGGCTCTGAACTCTACCGTTAAACCTTTAATTTG
AAGGGAAATTTGGAATTCTGGCCTCCGAGTAAAGGGCCCCAAAAGGTTCT
GGGCTGATCTCTCAACCCAATTTTTTTGGAAAAAAGGTTCCTTCCCAAAA
ATAACTTTTTGGAAAA

CTTATTTCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTATCTCTGTACC
CCAATTTTAAAAATGTTATTTGGTTCTCTGGTCTAACTAACTTCTTGAGC
TCTTTGTATATATTGAATAGTAGTCCTCTATTGAATGTAGGGTTGGTAAA
GATCTTCTCCCAATCTGTTGGTTGCCATTTTGTCCTGTTGCTCTATAGTA
CAGCTTGAGGTCAGGGATGGTCATTCTCCCAGAAGTTCTCTTATTGTTGA
GAATAGTTTTCCCTATCCTGGGTTTTTTGTTATTCCAGATATATTTGACA
ACTGCTCTTTCTATCTTTGTGAAGAATTGAGTTGGAATTTTGATGGGGAT
TACATGGAATCTGTGTATTGCTTTTGGTAAGATGGCCATTTTTACTGTGT
TAATCTTGCCAATCCATGAGCATAGGAGATCTTTTCATCTTCTGAGATCT
TCTTCAGTTTCTTTCTTCAGAGACTTGGAAGTCTTGTTGGACAGAACTTT
TCCTTGGCTTGGGTAAAATTTAACGGCACCCTTTATTTGCCGCCTTGAAC
AACCCTATAATTACTGGGTAAGAAATACTCCTTGATAGAATGTGCCCCCT
TCCTATTGTCCTGGGGGAAAATATTGTTGCATCTTGGTCTTTCTTTTCAA
TATAGGTGAGTGTCTCTCCCACTGGGTGGGTCTTCATTTTCTCTTTATTT
TGGTTGATATTGTGCATTCTTCTCTAATATAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_e23.b1 MSMg01no440_e23.b1 CHROMAT_FILE:
MSMg01no440_e23.b1 PHD_FILE: MSMg01no440_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:43 2005
         (452 letters)



>mm_chr1_92954448_92955299
          Length = 852

 Score =  781 bits (404), Expect = 0.0
 Identities = 437/448 (97%), Gaps = 1/448 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccttcttttatggctcttccgac-cagggtttccctctgtagccttggctgtccg 64
           |||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 816 gaatcccttcttttatggctcttctgacacagggtttccctctgtagccttggctgtccg 757

                                                                       
Query: 65  ggaactcacgtctgtagcccaggctgaccttgaattcctggagatccacctgcttctgcc 124
           ||| |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 756 ggagctcaagtctgtagcccaggctgaccttgaattcctagagatccacctgcgtctgcc 697

                                                                       
Query: 125 tcccgagtgctgggaccaaaagcatgtgacagcacggcccagccgagttgcttctttatt 184
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 696 tcccgagtgctgggatcaaaagcatgtgacagcacggcccagctgagttgcttctttatt 637

                                                                       
Query: 185 acaaagtggccatactttagatttcagggaaataaaccaaccacggaatgcacactggca 244
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 acaaagtagccatactttagatttcagggaaataaaccaaccacggaatgcacactggca 577

                                                                       
Query: 245 aggagagcgtttaattgtttttgtgttgtctctgcctttatcagctgttctggaatttgc 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 576 aggagagcgtttaattgtttttgtgttgtctctgcctttatctgctgttctggaatttgc 517

                                                                       
Query: 305 tcctggggcaagtgactactgcagtggtcagcaatcacctggcaatcctgagttacttct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tcctggggcaagtgactactgcagtggtcagcaatcacctggcaatcctgagttacttct 457

                                                                       
Query: 365 tgggtgtagtcacactaatgctgggtttaatctgagagacagatgtaaatccacttaact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgggtgtagtcacactaatgctgggtttaatctgagagacagatgtaaatccacttaact 397

                                       
Query: 425 atatagctactattgcaataagtccaat 452
           ||||||||||||||||||||||||||||
Sbjct: 396 atatagctactattgcaataagtccaat 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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