BAC Information

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BAC

Clone NameMSMg01-440H18
Chromosome1 (Build37)
Map Location 156,345,662 - 156,346,101
singlet/doubletsinglet
Overlap geneCacna1e
Upstream geneNpl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440H18.T7 (MSMg01no440_h18.b1)MSMg01-440H18.TJ (MSMg01no440_h18.g1)
ACCAG530590AG530591
length794780
length of high quality
(start - end)		439 (76 - 514)440 (82 - 521)
definitionCHROMAT_FILE: MSMg01no440_h18.b1 PHD_FILE: MSMg01no440_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:57 2005CHROMAT_FILE: MSMg01no440_h18.g1 PHD_FILE: MSMg01no440_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGC
GGAATTCTTTGTTCATCTCTGAGACCCATTTTTTTTTCCATTTTTTATTA
GGTATTTCGCTCATTTACATTTGCAATGCTATACCAAAAGTCCCCTATAG
CCACCCACCCCCTCTCCCCTACCCACCCACTCCCCTTTTATGGCCCTGGC
GTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCT
TTCCAGTGATGGCTGACTAGGCCAACTTTTGATGCATATGCAGCTAGAGT
CAAGAGCTCCGGGGTGCTGGTTAGTTCTTAATGTTGTTCCACCTATAGGG
TTGCAGATCCCTTTAGCTTCTTTGGTACTTTCTCTAGCTCCTTCATTGGG
GGCCATGTGATCCATCCAATAGCCGACTGTGAGCATCCACTTCTATGTTT
GCTAGGCCCAGGCATACTCTGACAAGAGACAGCTATATTCTGGGTCTCTC
ATTCTATTCCATGGGTCTACTTGTCTGTCCCTATACCAGTAACATGTAGG
TTTTATCCCAATAGCCCTGTATAAAACTTTTAAGCCACGGAGGTGGAATC
ACCCATAAAATCTTTTTATCCTTGAAAACAAAATTTTGCTTACCTCTTGT
ATTTTTTAATTTCAAAAGATACTTCGCCAACTACCCTTCTTATCATCCTT
TCTAAAATATTTATTTAACATTCTTAGATGCCTCTTTTCTAAATCTCTGC
CTATGTTATCTCGTCCTCACTACTCATATTCAATCATTATACTN

NNNNNCCCGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGACTAGACACAACAC
ATGGGCACTCCATTACACCACGGATGTAGAAATAGAGGATGGAACTGATT
ATATACATTCGCATCTTAAACCCAGACATATGTCAGGCCATCTTTCTACT
ATATGCCAGAACTCTCCCTTTAAAGTTCAGATGTTTTATCTATAGAAACT
GGACATCGTGAGATATTAAAAGGGCCACTCTTTGAGGTTACCAAATTCCT
CAGGAAATTTAGTGACAGGATCTGGTCTCTACATAAGGTCAAGGCCATGT
GTTCTGACTTTGTAACAGCATTATTTGTGTAATCCCTTGAATTCTTATAC
AGAGGAAACAATACTTAGATTCTTATGGGAAAAGACCACAGAAAGAACAT
GCTGCCCTTTCTCAGGCCTAGCCACCTAAATGCTTAGGGTCTGATGGACA
TGTACGATCTAAGGATCGAATGGCTACTTATTTCTGGGAATAGTGGAGAT
AATATTATTTACCCCTTTCCCCTGTAAATCCATATGAATACCTGGGGACA
AAGGGCTGAACCCCGGATGGGGATATTAAAAGCAGCCTGACAGAGGGTGG
GGAATATTTTCTGGGCCTTTTTTTATTCCCCCAAAGGAATAATAACCCCC
TATTCCGGGGGCCCAAGGAAAAGCTCCCAAAACCAAAAAAACTACGGAAG
GGGGCCCCATTTTCCCATTTTCCAAATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_h18.g1 MSMg01no440_h18.g1 CHROMAT_FILE:
MSMg01no440_h18.g1 PHD_FILE: MSMg01no440_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:57 2005
         (440 letters)



>mm_chr1_156345462_156346301
          Length = 840

 Score =  851 bits (440), Expect = 0.0
 Identities = 440/440 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagactagacacaacacatgggcactccattacaccacggatgtagaaatagaggatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 caaagactagacacaacacatgggcactccattacaccacggatgtagaaatagaggatg 581

                                                                       
Query: 61  gaactgattatatacattcgcatcttaaacccagacatatgtcaggccatctttctacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gaactgattatatacattcgcatcttaaacccagacatatgtcaggccatctttctacta 521

                                                                       
Query: 121 tatgccagaactctccctttaaagttcagatgttttatctatagaaactggacatcgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tatgccagaactctccctttaaagttcagatgttttatctatagaaactggacatcgtga 461

                                                                       
Query: 181 gatattaaaagggccactctttgaggttaccaaattcctcaggaaatttagtgacaggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gatattaaaagggccactctttgaggttaccaaattcctcaggaaatttagtgacaggat 401

                                                                       
Query: 241 ctggtctctacataaggtcaaggccatgtgttctgactttgtaacagcattatttgtgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctggtctctacataaggtcaaggccatgtgttctgactttgtaacagcattatttgtgta 341

                                                                       
Query: 301 atcccttgaattcttatacagaggaaacaatacttagattcttatgggaaaagaccacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atcccttgaattcttatacagaggaaacaatacttagattcttatgggaaaagaccacag 281

                                                                       
Query: 361 aaagaacatgctgccctttctcaggcctagccacctaaatgcttagggtctgatggacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aaagaacatgctgccctttctcaggcctagccacctaaatgcttagggtctgatggacat 221

                               
Query: 421 gtacgatctaaggatcgaat 440
           ||||||||||||||||||||
Sbjct: 220 gtacgatctaaggatcgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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