BAC Information

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BAC

Clone NameMSMg01-440K10
Chromosome1 (Build37)
Map Location 183,873,445 - 183,873,683
singlet/doubletsinglet
Overlap geneEnah
Upstream geneTmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr, EG433384
Downstream geneSrp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8, 4922505E12Rik, Susd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440K10.T7 (MSMg01no440_k10.b1)MSMg01-440K10.TJ (MSMg01no440_k10.g1)
ACCAG530716AG530717
length748744
length of high quality
(start - end)
285 (80 - 364)246 (81 - 326)
definitionCHROMAT_FILE: MSMg01no440_k10.b1 PHD_FILE: MSMg01no440_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:10 2005CHROMAT_FILE: MSMg01no440_k10.g1 PHD_FILE: MSMg01no440_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAAAGACCG
CGGAATTCATGCAGNTTACACAAAAACAAAGTCTGTGNTGTGGGAACACT
TCATTACCACCGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAAT
CCTTCTCAACAGTCTGTTTTACGGGAACCTTCATTACCATAACCCGCAGT
TCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCC
CGGTTTTTCTCATCCCAGGATTTCTCGTCCCGGGTTTTTTCTTCCCGGAT
TTTCTCGTCCCGGATTTCGGCATTTTTTCTTGCACGCTTTCTCACGACCG
GCCAGGAAGAACACTACAAACCACAATCTTCTGCGGCAAAACTTTATTGC
TTACATCTTCAGGAGCAAGAGTGCTAAACTCAAACCCAAAAACGAAAGCG
AAACCCCGTCCCTATTTAGGAGAGTTATCCTTCGCCTAGGACGTATCACT
CCCTGATTGGCTGCAGCCCATGGCCGAGCTGTTGCCACGGGGAAGGCAGA
GTACATGGGGTGGAGAAATACCCTTGGCTCATGTGCAGATTATTTGTTTA
CCCCTTAGAACACAGCTTGTCGCTGCCATCTTTGGGACGGCGGAATGTGG
CTGCTGCTTTCCCAAAATTTTTTTTTCCATTTTTTGATAAGAGTAATTTA
GCCTCATTAACATTTTCCCATGGTTTTTTCCCATAAGACCTCCCATTT
TTCTCTATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGAAAAATATGAAGCTTTTAATGGACTGT
AAGGTTGTCATAAAAAGCCAGAGAAAAATTCTAAGTANNAAAAAAAAAAA
AAAAAAAAAAAATCAAAGATACATCCTTGCTCACCATTGTTTCCAGGAGT
GAAGAAAGCATGGCTGGAGCAACTTAGCTCTTCTTTTACAAGAAATGTGA
AACTCAAAAATAATGCTGCACTGTTCAAACTGAGGAGAACATATCTACTG
AGATGGAAGCGCTTGCTTCTGGTAAGCATATTTACTTTCAAAGGTCCCAG
GAAGAGCAATGAGACAGCTCTGCTTTCCAAAGAAGGAAATTCAACATTGA
CTTATGCAAATACTATATTACTGCACTAAACACACCCTTCAGTCTACCTT
AAGGGGTCTAGAAGTTCCATTTCAAAAGAAAAATCTGAGCTTTAATATAA
AAGAGTCACATTGGAGATTTACTCTTTACAAGCAATTAAGTGCTACTTGT
GGCTAACTCTGGATTTACTAAATTTCTTTCTATAACCCAGAAATTGACTA
TTTAAAATGCTTTGAAAAAAGCATGGAAAAGAAAGATGTGCACCACAGAT
CTCACAGGGTGTAGGTGTTTGTGTTCATAAGTCTGGCAAAATAGGAACCC
AAGGTAAAGCTTGTCCCTAAACCATTCATATAAAATTCTGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_k10.g1 MSMg01no440_k10.g1 CHROMAT_FILE:
MSMg01no440_k10.g1 PHD_FILE: MSMg01no440_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:10 2005
         (246 letters)



>mm_chr1_183873238_183873883
          Length = 646

 Score =  437 bits (226), Expect = e-127
 Identities = 238/246 (96%), Gaps = 7/246 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaagcttttaatggactgtaaggttgtcataaaaagccagagaaaaattctaagtanna 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 208 tgaagcttttaatggactgtaaggttgtcataaaaagccagagaaaaattctaagta--- 264

                                                                       
Query: 61  aaaaaaaaaaaaaaaaaaaaaatcaaagatacatccttgctcaccattgtttccaggagt 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ----aaaaaaaaaaaaaaaaaatcaaagatacatccttgctcaccattgtttccaggagt 320

                                                                       
Query: 121 gaagaaagcatggctggagcaacttagctcttcttttacaagaaatgtgaaactcaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagaaagcatggctggagcaacttagctcttcttttacaagaaatgtgaaactcaaaaa 380

                                                                       
Query: 181 taatgctgcactgttcaaactgaggagaacatatctactgagatggaagcgcttgcttct 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatactgcactgttcaaactgaggagaacatatctactgagatggaagcgcttgcttct 440

                 
Query: 241 ggtaag 246
           ||||||
Sbjct: 441 ggtaag 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)