BAC Information

Click to search

BAC

Clone NameMSMg01-440L04
Chromosome1 (Build37)
Map Location 57,057,618 - 57,224,346
singlet/doubletdoublet
Overlap geneEG329160
Upstream geneHsfy2, Satb2, 9130024F11Rik, LOC100042869
Downstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440L04.T7 (MSMg01no440_l04.b1)MSMg01-440L04.TJ (MSMg01no440_l04.g1)
ACCAG530752AG530753
length765775
length of high quality
(start - end)
468 (49 - 516)228 (79 - 306)
definitionCHROMAT_FILE: MSMg01no440_l04.b1 PHD_FILE: MSMg01no440_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:14 2005CHROMAT_FILE: MSMg01no440_l04.g1 PHD_FILE: MSMg01no440_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,057,618 - 57,058,028)(57,224,138 - 57,224,346)
sequence
NGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGAAGAGCCCTTGCCTGGAAAGCTCAGCCAGGTATACACACA
CACACTCACACACACTTGTTCATCACACATGCACATGTACACACACACAC
ACACACACACACACACACACACACACACACATGCTTCTTCATATACATAC
ACAAACACACATACATATGTGCACACACACACACACACACACACACACAC
ACACACACACTATCCCTCCCTACTTTGCTACCTGATTATTACCTGAGAAT
TTGGGGGTCAGAAGCAGGAGGATCATGAATCACCACCTAGCTTGAGATAC
ATAACAAATTCCAGGACAGCCTGAACACAGAGACCCTATTTCATCTTTGT
GTTCTAAAAGACAAGTTGCATTCATGTAGCCGTTAGCTGATAGAGTTAAA
TTCATTTAGCAACAATCCCTCTCCAGGCTGGGAAATCTGTGGAAGCCTTA
GAGTTACCACGCTTACTCTGAGGGCAGGGAGTGGAGAATTGCCAGCCATC
TTGCATGCCCTCACTGACACAGTGGAACCCTCCTCGAAGAAACAAAGCAA
GACAGTCTTCATTGACTTAACACTCACTCTCAACTTAACATGAAACATAA
AAACTTTGCCATTTAATTACCCCCTTAACATTCAAGTCCATAGTTCCTTT
AATCTAAACCTGAACGGAACAATTCTGTCTTAAAAACTTGACTTTTAAAT
AATCTTGTCCATAAT
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTATTTTTGCCCTTACATAT
GCATGTGTAACATATTACAGCTAGAGAACGTCTCTCACATCCACCAGTAA
CACAGGAAGGATGGAGCTACCTATAAATTCCAGAAGTCTCTTATCTCAAA
AAAGATCCTGCACTGTTAAATGAACACAGAGTAGAATGGAGTGTTGGACT
GAAGTAAAGATGGAAAGATGATGCATGTGGCGGGGGGGGGGGGGGNCTCT
TGTCTGNANCNNNANNCTCTACTCTATCTATTTTTTTTTCTGACTTTGAG
TCATATTATGGCCAAAGGCTATAGAATGGTGATCACTGCTGGCTGGATAT
TTCTTTTGCCTGAAAGTCTTTAGGCTGCCGCCTCCTTTTGTATTATTATT
TCCACGTTAGATTCTTGAATCTTAGTATGTCATAAACTCGGACAATATTG
TTTTTCCAAGTTAGAATTACTAACTTTTGCACTTTATTTTGTGAATTTTA
TAACTTATTTTCTCGATACCGCCATTTTACCGTGGTATATTTAATTTTAA
TGTACGTCACTTCTTGTAGCATTTTATATACTACTTTGAACTTTTGGCTC
AGTGCCCACTTTCTTTCAGACTAATCACAGGGTTGTATTTTGTAAGACTT
CTTACTACCTATCTCTTCCTCGCACATATCTTTCTTTCACTAACTCATTT
CGTGATCCTGTTTTTCACGTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_l04.b1 MSMg01no440_l04.b1 CHROMAT_FILE:
MSMg01no440_l04.b1 PHD_FILE: MSMg01no440_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:14 2005
         (468 letters)



>mm_chr1_57057364_57058231
          Length = 868

 Score =  652 bits (337), Expect = 0.0
 Identities = 406/461 (88%), Gaps = 50/461 (10%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaagagcccttgcctggaaagctcagccaggtatacacacacacactcacaca 64
           |||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct: 255 gaattcagaagagctcttggctggaaatctcagccaggtatatacacacacactcacaca 314

                                                                       
Query: 65  cacttgttcatcacacatgcacatgtacacacacacacacacacacacacacacacacac 124
           |||||||||||||||||||||||||||||||||||||||                     
Sbjct: 315 cacttgttcatcacacatgcacatgtacacacacacaca--------------------- 353

                                                                       
Query: 125 acacacacatgcttcttcatatacatacacaaacacacatacatatgtgcacacacacac 184
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ---------tgcttcttcatatacatacacaaacacacatacatatgtgcacacacacac 404

                                                                       
Query: 185 acacacacacacacacacacacacacactatccctccctactttgctacctgattattac 244
           ||||||||                    ||||||||||||||||||||||||||||||||
Sbjct: 405 acacacac--------------------tatccctccctactttgctacctgattattac 444

                                                                       
Query: 245 ctgagaatttgggggtcagaagcaggaggatcatgaatcaccacctagcttgagatacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgagaatttgggggtcagaagcaggaggatcatgaatcaccacctagcttgagatacat 504

                                                                       
Query: 305 aacaaattccaggacagcctgaacacagagaccctatttcatctttgtgttctaaaagac 364
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 aacaaattccaggacagcctgaacacagagaccctatttcatctttgttttctaaaagac 564

                                                                       
Query: 365 aagttgcattcatgtagccgttagctgatagagttaaattcatttagcaacaatccctct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagttgcattcatgtagccgttagctgatagagttaaattcatttagcaacaatccctct 624

                                                    
Query: 425 ccaggctgggaaatctgtggaagccttagagttaccacgct 465
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccaggctgggaaatctgtggaagccttagagttaccacgct 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no440_l04.g1 MSMg01no440_l04.g1 CHROMAT_FILE:
MSMg01no440_l04.g1 PHD_FILE: MSMg01no440_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:14 2005
         (228 letters)



>mm_chr1_57223938_57224565
          Length = 628

 Score =  389 bits (201), Expect = e-113
 Identities = 207/209 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttatttttgcccttacatatgcatgtgtaacatattacagctagagaacgtctctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tcttatttttgcccttacatatgcatgtgtaacatattacagctagagaacgtctctcac 350

                                                                       
Query: 61  atccaccagtaacacaggaaggatggagctacctataaattccagaagtctcttatctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atccaccagtaacacaggaaggatggagctacctataaattccagaagtctcttatctca 290

                                                                       
Query: 121 aaaaagatcctgcactgttaaatgaacacagagtagaatggagtgttggactgaagtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aaaaagatcctgcactgttaaatgaacacagagtagaatggagtgttggactgaagtaaa 230

                                        
Query: 181 gatggaaagatgatgcatgtggcgggggg 209
           |||||||||||||||||| ||| ||||||
Sbjct: 229 gatggaaagatgatgcatatggtgggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)