Query= MSMg01no440_l04.b1 MSMg01no440_l04.b1 CHROMAT_FILE:
MSMg01no440_l04.b1 PHD_FILE: MSMg01no440_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:14 2005
(468 letters)
>mm_chr1_57057364_57058231
Length = 868
Score = 652 bits (337), Expect = 0.0
Identities = 406/461 (88%), Gaps = 50/461 (10%)
Strand = Plus / Plus
Query: 5 gaattcagaagagcccttgcctggaaagctcagccaggtatacacacacacactcacaca 64
|||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct: 255 gaattcagaagagctcttggctggaaatctcagccaggtatatacacacacactcacaca 314
Query: 65 cacttgttcatcacacatgcacatgtacacacacacacacacacacacacacacacacac 124
|||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cacttgttcatcacacatgcacatgtacacacacacaca--------------------- 353
Query: 125 acacacacatgcttcttcatatacatacacaaacacacatacatatgtgcacacacacac 184
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ---------tgcttcttcatatacatacacaaacacacatacatatgtgcacacacacac 404
Query: 185 acacacacacacacacacacacacacactatccctccctactttgctacctgattattac 244
|||||||| ||||||||||||||||||||||||||||||||
Sbjct: 405 acacacac--------------------tatccctccctactttgctacctgattattac 444
Query: 245 ctgagaatttgggggtcagaagcaggaggatcatgaatcaccacctagcttgagatacat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgagaatttgggggtcagaagcaggaggatcatgaatcaccacctagcttgagatacat 504
Query: 305 aacaaattccaggacagcctgaacacagagaccctatttcatctttgtgttctaaaagac 364
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 aacaaattccaggacagcctgaacacagagaccctatttcatctttgttttctaaaagac 564
Query: 365 aagttgcattcatgtagccgttagctgatagagttaaattcatttagcaacaatccctct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagttgcattcatgtagccgttagctgatagagttaaattcatttagcaacaatccctct 624
Query: 425 ccaggctgggaaatctgtggaagccttagagttaccacgct 465
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccaggctgggaaatctgtggaagccttagagttaccacgct 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_l04.g1 MSMg01no440_l04.g1 CHROMAT_FILE:
MSMg01no440_l04.g1 PHD_FILE: MSMg01no440_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:14 2005
(228 letters)
>mm_chr1_57223938_57224565
Length = 628
Score = 389 bits (201), Expect = e-113
Identities = 207/209 (99%)
Strand = Plus / Minus
Query: 1 tcttatttttgcccttacatatgcatgtgtaacatattacagctagagaacgtctctcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tcttatttttgcccttacatatgcatgtgtaacatattacagctagagaacgtctctcac 350
Query: 61 atccaccagtaacacaggaaggatggagctacctataaattccagaagtctcttatctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atccaccagtaacacaggaaggatggagctacctataaattccagaagtctcttatctca 290
Query: 121 aaaaagatcctgcactgttaaatgaacacagagtagaatggagtgttggactgaagtaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aaaaagatcctgcactgttaaatgaacacagagtagaatggagtgttggactgaagtaaa 230
Query: 181 gatggaaagatgatgcatgtggcgggggg 209
|||||||||||||||||| ||| ||||||
Sbjct: 229 gatggaaagatgatgcatatggtgggggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space: 135561
Effective search space used: 135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|