NCCACCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATCAAGAATATCCAATAACTCTACTAAGCATGTACGAAT
GTAATAATAACTCCAAAATACATGAAACTAAGTTGGCAGAATTAGTGGAA
ACAACAACAACAACAACAACAACAACAGCAACAACAACAACAACTGCAAC
TACCCAACTCCACAATTAGAATTGGATACATTTTTCTTTTACCTCTCTTT
CAAAAGTTAAAACAATTTGACAGAACTCAAGATAAAGCAGGGATATCATG
GAAGATCTAGACAACAGATTCACCTATCTTGATCTAAATGACATTTATAG
CCTTATAGCCGATACCTAGAGATAGCGCATTTCTCTGCCAAGTACACGTG
CAGAGCTGGGGGTGTAGCCCAGCTGCCACAGTGCCTGCCCAGTGAGCATG
GTGTCCTGGGCTCATGTCCCAGCATTTCGTAAATCAGTGTGCTGACACAT
ACTTGAGATCCCAGTTCTTTGGTAGGCGCACTCAATAGAACCTGTTCTCC
CCCTTTTGAAAATCAAGGCCACTCCATTATTTAAAGATGCGCACAACCCT
ACTTTCACCCTCCCTTCCTGCCAAGGCACCCTTCATCACTACACAGCCAA
ACGCTCAAAAATAAGAACACTTTTCCCACAACTTATACCAACATATCTCC
CCCTTTATATTGTGCATCAAATACTACTTATCATCTTAATTCACACACCC
CTTCACTATCTTTTCTCTTTATTCCTG

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCAAATAAAA
ATGTCCTGAATATTGCTATATAATAACGTGACTCCCTCACCAGTACTAAA
CTATATACTTACAGCTTACTGTTGCCCTTTACATATGCAGAAACAGCTAT
CATGGATACAGGAGTGGTTGCTGTTTAAACAGAGGCATGGTTACTGTTTA
ACTCTATGTAATGCGTTCTTCACAGTCACCTGGAAGGGGCAGGGTTATTA
CTACTATTCCTACTTCAGCATTTTTCAGAGTACTTTTTTTTTAATTGTGT
GTATGTCCGTGTGTGAGTGCAATGCCCCTGGGGAGTCCAGAAGAGAATGG
TGGATCCCTGGAGCTGGAGTTACAGGTCATTGGGAACTGTCTAACATGGG
GAACTAACCTGAGTCCTCAGGAAGAGGAGTGCTCTTAACCAGGAGCTATT
TCTCCTGCCTCTGTTGTGCTTGTTTTTAGAGGAGCACTGAAGCTTAGCTA
TCCCCAACTGACAGCAAAGGGAAAAATCAGTTCTCTCCAATGGCATCTCA
CTGGCATACAAAACACATTCAAGGGCACGCCCCCTACCCAGCAATAGATG
GTTAATCCTAAAACGAACCCCGTGGTATTTTGGGAGAATTTTTTCATTCC
ATACCACCTCGTCACTACTTTTTAAATACTCTCTCATTCAACTTCTAGTC
ATCTTG

Query= MSMg01no440_l08.g1 MSMg01no440_l08.g1 CHROMAT_FILE:
MSMg01no440_l08.g1 PHD_FILE: MSMg01no440_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:15 2005
         (484 letters)



>mm_chr1_186538231_186539114
          Length = 884

 Score =  859 bits (444), Expect = 0.0
 Identities = 479/498 (96%), Gaps = 15/498 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaccaaataaaaatgtcctgaatattgctatataataacgtgactccctcaccagtact 60
           |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 187 tcaccaaataaaaatgtcctgaatattgttatatagtaacgtgactccctcaccagtact 246

                                                                       
Query: 61  aaact-a--ta-----------tacttacagcttactgttgccctttacatatgcagaaa 106
           ||||| |  ||           ||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaacttacttacagcttactgttacttacagcttactgttgccctttacatatgcagaaa 306

                                                                       
Query: 107 cagctatcatggatacaggagtggttgctgtttaaacagaggcatggttactgtttaact 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cagctatcatggatacaggagtggttgctgtttaaacagaggcatggttactgtttaact 366

                                                                       
Query: 167 ctatgtaatgcgttcttcacagtcacctggaaggggcagggttattactactattcctac 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctatgtaatgcgttcttcacagtcacctggaaggggcagggttattactactattcctac 426

                                                                       
Query: 227 ttcagcatttttcagagtactttttttttaattgtgtgtatgtccgtgtgtgagtgcaat 286
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 427 ttcagcatttttcagagtactttttttt-aattgtgtgtatgtccgtgtatgagtgcaat 485

                                                                       
Query: 287 gcccctggggagtccagaagagaatggtggatccctggagctggagttacaggtcattgg 346
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 486 gcccctggggagtccagaagagaatggtggatctctggagctggagttacaggtcattgg 545

                                                                       
Query: 347 gaactgtctaacatggggaactaacctgagtcctcaggaagaggagtgctcttaaccagg 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaactgtctaacatggggaactaacctgagtcctcaggaagaggagtgctcttaaccagg 605

                                                                       
Query: 407 agctatttctcctgcctctgttgtgcttgtttttagaggagcactgaagcttagctatcc 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agctatttctcctgcctctgttgtgcttgtttttagaggagcactgaagcttagctatcc 665

                             
Query: 467 ccaactgacagcaaaggg 484
           ||||||||||||||||||
Sbjct: 666 ccaactgacagcaaaggg 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)