TAAATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCNNAAAATTTTCCAAAAATATAGTAGTTCCTCTAAAATA
GATTTACCATATCGTTTAGAAATTATACAGCTTGGTATTTACCTCAAAGT
TTATATTAGGGTGCCATAAAACATGTCCATATGTATTCATAGCCACTTTA
TTCACAATAGCCAACAAATGGAAAAAAACAAGTGTCTACTAATGAATGAG
TAGATGGACAGAATGAAGTACACATACATAACTGAATATTATTCAGACTT
AATCCAGAAGTAATCTGTGTTATGATCTCATATCAGTACCTAGAATAACC
AAGTTCATGGAGATAGACAGGAGAGCAGTAGTTGCCTGGGGAGTAGGGAA
CCATGTCATAGGAAGATACACAGAGTTCTAGAGAGACTGGCTTCAAGGTA
TATGTAGTGTTGATGTTCAAATTACTCAGTTTTAATGAGAAATTGTAATG
GTAGCACTTTTCATGTTGTGGGTATTTTACTACAATTAAAAAAGTTGGTG
AATTCCCCCTGCCCCTATGACTACGATATAAGAAAATTAAGTAATCTTAT
ATTTTAAAAAAGGATCTTGATAATCTTTGATCACAAACCCTAAATTAAGC
TAATTGTGGAATCGGAAAAAATTGGTTTTATTTACCTGTGTAAAACTTGA
CCGCCCTACTACAAAAGTATTTTGATAACCTTATCCCATCTCTCTGTCAC
AATATTCCTTTCCCTG

NNNNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGATGGGTGC
TGAACCTCTGTGCTTCCCACCCAGGAAGTGAGCCACCACTTGTGCATGTC
TGTCAGAAATAGTGTGGTATGGGGGTAATGAGAAAACTGAGCTGGTGCCA
GGAGCCTGGGGGCAAGCTATAGTTCAGCTACTGATGAACTGAATAGCATT
GGACAAGTCACTTTGCTTCCTGATTCTCAAATAGCCCATCTGGAAATTAG
AACCAGCTGATGTGTACAATCCCCTAAGTGGTCCTCAGGAAGCTAGAGCA
ATATGACCCATAGAATCTGCAAAACACACACACACACACACACACACACA
CCAACCAGAAACCAGTTTGTCAATTACAAGTCAAATCTTCATATGGACAC
TGGACAGTTGTTTGGCTTAATTCATTTTATAAGGGGAAAATTTCACTATC
TCTAGTCATTGCCTTCTATTGATATGTAAGGAGCCTCAGAGAAACCAGGA
ACACAGAGGACATGGAAATTGGGAAGCCTCTGAGAAATTAAACCCGAGAA
TACCAATGAGGCTTAGGGGACGAACTAAATATATACCCTTATGCCTGTGG
TGGGCCCTAACCCAGTGGAGACATCTAGTGACTAAGTCTTCAGAACCTTA
GAAAGTAGTGGGGTTGTCCCTCAATCTTGCCAAACCTTTTCCTAG

Query= MSMg01no440_m14.b1 MSMg01no440_m14.b1 CHROMAT_FILE:
MSMg01no440_m14.b1 PHD_FILE: MSMg01no440_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:21 2005
         (448 letters)



>mm_chr1_196779622_196780469
          Length = 848

 Score =  611 bits (316), Expect = e-179
 Identities = 322/324 (99%)
 Strand = Plus / Minus

                                                                       
Query: 125 ttcacaatagccaacaaatggaaaaaaacaagtgtctactaatgaatgagtagatggaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 ttcacaatagccaacaaatggaaaaaaacaagtgtctactaatgaatgagtagatggaca 789

                                                                       
Query: 185 gaatgaagtacacatacataactgaatattattcagacttaatccagaagtaatctgtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gaatgaagtacacatacataactgaatattattcagacttaatccagaagtaatctgtgt 729

                                                                       
Query: 245 tatgatctcatatcagtacctagaataaccaagttcatggagatagacaggagagcagta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tatgatctcatatcagtacctagaataaccaagttcatggagatagacaggagagcagta 669

                                                                       
Query: 305 gttgcctggggagtagggaaccatgtcataggaagatacacagagttctagagagactgg 364
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 668 gttgcctggggagtagggaaccatgtcataggaagatacacagagttccagagagactgg 609

                                                                       
Query: 365 cttcaaggtatatgtagtgttgatgttcaaattactcagttttaatgagaaattgtaatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cttcaaggtatatgtagtgttgatgttcaaattactcagttttaatgagaaattgtaatg 549

                                   
Query: 425 gtagcacttttcatgttgtgggta 448
           |||| |||||||||||||||||||
Sbjct: 548 gtagtacttttcatgttgtgggta 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no440_m14.g1 MSMg01no440_m14.g1 CHROMAT_FILE:
MSMg01no440_m14.g1 PHD_FILE: MSMg01no440_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:21 2005
         (478 letters)



>mm_chr1_196608991_196609868
          Length = 878

 Score =  878 bits (454), Expect = 0.0
 Identities = 472/478 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggatgggtgctgaacctctgtgcttcccacccaggaagtgagccaccacttgtgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggatgggtgctgaacctctgtgcttcccacccaggaagtgagccaccacttgtgcat 260

                                                                       
Query: 61  gtctgtcagaaatagtgtggtatgggggtaatgagaaaactgagctggtgccaggagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctgtcagaaatagtgtggtatgggggtaatgagaaaactgagctggtgccaggagcct 320

                                                                       
Query: 121 gggggcaagctatagttcagctactgatgaactgaatagcattggacaagtcactttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggggcaagctatagttcagctactgatgaactgaatagcattggacaagtcactttgct 380

                                                                       
Query: 181 tcctgattctcaaatagcccatctggaaattagaaccagctgatgtgtacaatcccctaa 240
           || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tcttgattctcaaatagcccatctggaaattaggaccagctgatgtgtacaatcccctaa 440

                                                                       
Query: 241 gtggtcctcaggaagctagagcaatatgacccatagaatctgcaaaacacacacacacac 300
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggtcctcagaaagctagaacaatatgacccatagaatctgcaaaacacacacacacac 500

                                                                       
Query: 301 acacacacacacaccaaccagaaaccagtttgtcaattacaagtcaaatcttcatatgga 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acgcacacacacaccaaccagaaaccagtttgtcaattacaagtcaaatcttcatatgga 560

                                                                       
Query: 361 cactggacagttgtttggcttaattcattttataaggggaaaatttcactatctctagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactggacagttgtttggcttaattcattttataaggggaaaatttcactatctctagtc 620

                                                                     
Query: 421 attgccttctattgatatgtaaggagcctcagagaaaccaggaacacagaggacatgg 478
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 attgccttctattgatatgtagggagcctcagagaaaccaggaacacagaggacatgg 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)