NCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCCCTGTCCAGGGGGTCTTCTTTCGTGCCTGAAGATGTCTCGT
CCCAGGTTTTCGGCATCACTTGTGAGCGCCCGACTCACCAGCAAAGCAGA
TGCCACAACAGGATTCTTCTGCACACGTTTATTGGAAGAGCTTGATTGCA
GAGACGCCACAACAGGATTCTTCTGCACACGTTTATTGGGAGAGCTTGAT
TGCAGAGGAGAAAAGACCCAGAGCCCAGAACTGGTGCTGCTTATAAAGGC
CTAGGAGAGGCATGTCTCACACCCGATTGGTTATGCTTTCAGCACTTCAT
TTACATGTCTCACATCTGATTGTTTATGCTCTCAGTACCTCACAGAACCT
CATTAACATGCCCAGGCCAGGCAGTGACTCCGCAAAAAACTTTACTGCAT
ATGTACACATTAGTTGTTTACCCAAACTTATGCATGGTGGCCAGCGGTAG
CCAGCACCACCTTGTAATGGCATATGTGGCTTCCCACAAGCATAGATATG
GATATTTTAAACACCTTTAACTTAATCTTTAATACTGCCTTTTCTAATTT
GCAGCTTCTGGAACCTAACAACTATTTTTGCGATTGAGAGCTTACGAATG
ATTCCCAGGTAATGGGCAGTTTCTCTTCGTTTGCCTGTTTTATTCCGTTT
CCTGTGTCGGCTCTTTTGAGACAAATCTCCTTAACCCAGCT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTATTTTTACTGTCTTAAGT
ACGTTTGGGGATTTATACCTAGAAAATATCTTCACACTTAGAGATTATAT
TAATCTGCTAAATAGAAACTTGTATGGTTATTATACAAAGAATGTGATGA
AGGCCATGACCAGATAACTGAAAGTTGAAAGAATTAAACACATTCAGAGA
TAAAGTTTATAGAATTTACATGTTCATAATTGATTTATAAGTTTGACTTG
ATTCCCTGTAGGAAACTTCACCCTTCCAGAGGTTGCAGAATGCTTTGATG
AAATAACCTATGTTGAACTTCAGAAAGAGGAAGCCCAAAAGCTTTTGGAG
CAATATAAAGAAGAAAGCAAAAAGGCACTGCCACCAGAGAAGAAGCAAAA
CACTGGCTCAAAGAAAAGCAATAAGAATAAGAGTGGCAAGAACCAGTTCA
ACAGAGGTGGTGGCCATAGAGGCCGTGGAGGATTCAATATGCGAGGTGGC
AATTTCAGAGGAGGAGGCAAGTTAATTTTGCCTGTTGTTATTTGGAATTT
GAAAAGAATGAGTTTATTTTTTAAGTTAAATAGGAAGNTAGTTTCTTTGA
TAATTTGCTGCCATGTTTGACTAAAACCCAAGGAGGGGAGGGGATTGGGT
AAACTTAAAACCGGGGATTTGCTTACTTTTTCATTAACGAAAAAATAAAT
CGTTG

Query= MSMg01no441_e18.g1 MSMg01no441_e18.g1 CHROMAT_FILE:
MSMg01no441_e18.g1 PHD_FILE: MSMg01no441_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:01 2005
         (438 letters)



>mm_chr1_180260574_180261412
          Length = 839

 Score =  826 bits (427), Expect = 0.0
 Identities = 436/439 (99%), Gaps = 1/439 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttatttttactgtcttaagtac-gtttggggatttatacctagaaaatatcttcaca 59
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 639 actttatttttactgtcttaagtacggtttggggatttatacctagaaaatatcttcaca 580

                                                                       
Query: 60  cttagagattatattaatctgctaaatagaaacttgtatggttattatacaaagaatgtg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cttagagattatattaatctgctaaatagaaacttgtatggttattatacaaagaatgtg 520

                                                                       
Query: 120 atgaaggccatgaccagataactgaaagttgaaagaattaaacacattcagagataaagt 179
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atgaaggccgtgaccagataactgaaagttgaaagaattaaacacattcagagataaagt 460

                                                                       
Query: 180 ttatagaatttacatgttcataattgatttataagtttgacttgattccctgtaggaaac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttatagaatttacatgttcataattgatttataagtttgacttgattccctgtaggaaac 400

                                                                       
Query: 240 ttcacccttccagaggttgcagaatgctttgatgaaataacctatgttgaacttcagaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttcacccttccagaggttgcagaatgctttgatgaaataacctatgttgaacttcagaaa 340

                                                                       
Query: 300 gaggaagcccaaaagcttttggagcaatataaagaagaaagcaaaaaggcactgccacca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gaggaagcccaaaagcttttggagcaatataaagaagaaagcaaaaaggcactgccacca 280

                                                                       
Query: 360 gagaagaagcaaaacactggctcaaagaaaagcaataagaataagagtggcaagaaccag 419
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gaaaagaagcaaaacactggctcaaagaaaagcaataagaataagagtggcaagaaccag 220

                              
Query: 420 ttcaacagaggtggtggcc 438
           |||||||||||||||||||
Sbjct: 219 ttcaacagaggtggtggcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 839
Length adjustment: 9
Effective length of query: 429
Effective length of database: 830
Effective search space:   356070
Effective search space used:   356070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)