BAC Information

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BAC

Clone NameMSMg01-441F10
Chromosome1 (Build37)
Map Location 69,986,476 - 69,986,910
singlet/doubletsinglet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441F10.T7 (MSMg01no441_f10.b1)MSMg01-441F10.TJ (MSMg01no441_f10.g1)
ACCAG531244AG531245
length1,111762
length of high quality
(start - end)
---500 (79 - 578)
definitionCHROMAT_FILE: MSMg01no441_f10.b1 PHD_FILE: MSMg01no441_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:05 2005CHROMAT_FILE: MSMg01no441_f10.g1 PHD_FILE: MSMg01no441_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATTTATACAACATTGGGGGTCGTCAAAAACAGACTACCTTTTTCCCAAA
GCAGGATTCTGCGGTAATTCTAATTATTTCCATAAAATAATCCTCAATAA
TATATATCCAATTACATGGAAAATGTTCATATTATTATGGTACGATCTTG
CACCTAACATTTCTTCCCATAACGCGCCGATGTTTATTTATCCACGCAAA
GGAACTCCACATCAAAAGTGCATATCAGTGCACCTGCAGGTCCCTCCGGT
GTTGTCCCATTTAAAATTCATAGCTTAACGCCCCCTGCACCTATCAACTG
AATATTCGACACACTTATTGCCCCCCAGTTTNCTCTATTTATCATTCCAA
GTATTTCCCCTGGTTATATAATATCTCCTGGTGGACAATGAAGCCTATAT
CCAATATGACAAATTAATTATNATAAGAACAGACGGCGCCAGCCAACCTC
ATCAAATAACTCAATTTCTATTTAATAGTGCTATAATTACTTACCCAGAT
AATCGAGTTGATACTTCGTCCAACTCATAGCCCCCCCTCTTGTATTTCAT
CCTCCATTATAAATACCTACTTGTATGCCCGAATATAATTTTGATATCCA
CTATTCCTCCTTCGATTCCGGTCCCCTACTATCCTCGCTATCCCTCGCCG
CCGCTATTTTATCATACCGCACTTACTCATTATTATATCCTATCATCACT
CTCTTCCACATATCCTGCATACTCGCCTCATCCACTTATGATATTATCAC
CTCTATTATATCCTCTACATAGGAACTACCACATATCATGCACCATTACT
CCGATATATAATCATACAACTCCCTCTGTACCCCACAATAAACACGCTGT
GTGTGTTTATATATATTATATCTGCACGCGCGTTATATATTATACCCTCT
GTTATATACCTCGACCGGAACGTATTATATCTGTATTTTATATTCGCCCA
CTTATATAACATATAATCCACCTTTATATTTATTCTATTATCTCCCTCCA
TTCGTCTTATACTCGGCTCTACCTATCTCGCGGTATACTCTCTGCGAGAT
GGGACGTCCCGCACTATTCCACGCCCCACGTTCTTTTTGTTACGNACACT
TACTACATTAT
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCCAGTGGAAGGCCACACAT
TGAAGACATGTGGGCAACTCATAATGGACTTAATGGGTTTAAAAACCAAA
AGAAAACACAAAGTTGGGTAGATAGGGTAGCTTGGATAAATCTGTGGAGA
GTTGGAGAAGGTGGCAGATATGAACAAGACAAACTGTAAAAACTCTTAAC
TAATAAAATTAATTAGAAATATTTATTGAAGTATGTAGATATATTTATAT
TCATTTATGCCTTAAACATTTTTTTATATTAAGTATAATTTGAGGTTATT
TTAGTCAGCTTTATAGTAGCATGCTCTTAAAAGTGAAAGTGCTTTGATTC
TTCATACTTAGGAATTTGTTTGATAAATATGAAGTATATTCTTCCTTCTT
CTGTGGGATATGTGGGTAGAACTGAGCATTGTGAAAAGGAATTGATTGAA
ATTCCCAACATTAAAAACTTGAAGCAAAATTGATATGATCTACAATTATG
TGTACAGCTATTATTGAATTATGTTTACATTGGGCACAAGCAGAATACAT
TTTACTGAGTTATCCTTTATTGAGTTTATGCAACATCCTAATTATCTGTT
TGCTCCCTTTGGCACAACAATCTATGTGAATAACTTCCCCCCTTGTGATA
CATAATGTATATTTGCGAACACCAATCTCATTATGGCCCTTAATAATCTT
CCTTTTCCTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_f10.g1 MSMg01no441_f10.g1 CHROMAT_FILE:
MSMg01no441_f10.g1 PHD_FILE: MSMg01no441_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:05 2005
         (500 letters)



>mm_chr1_69986276_69987175
          Length = 900

 Score =  810 bits (419), Expect = 0.0
 Identities = 431/435 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctccagtggaaggccacacattgaagacatgtgggcaactcataatggacttaatgggt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 cctccagtggaaggccacacattgaagacatgtgggcaacacataatggacttaatgggt 260

                                                                       
Query: 61  ttaaaaaccaaaagaaaacacaaagttgggtagatagggtagcttggataaatctgtgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaaaccaaaagaaaacacaaagttgggtagatagggtagcttggataaatctgtgga 320

                                                                       
Query: 121 gagttggagaaggtggcagatatgaacaagacaaactgtaaaaactcttaactaataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagttggagaaggtggcagatatgaacaagacaaactgtaaaaactcttaactaataaaa 380

                                                                       
Query: 181 ttaattagaaatatttattgaagtatgtagatatatttatattcatttatgccttaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaattagaaatatttattgaagtatgtagatatatttatattcatttatgccttaaaca 440

                                                                       
Query: 241 tttttttatattaagtataatttgaggttattttagtcagctttatagtagcatgctctt 300
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaatttatattaagtataatttgaggttattttagtcagctttatagtagcatgctctt 500

                                                                       
Query: 301 aaaagtgaaagtgctttgattcttcatacttaggaatttgtttgataaatatgaagtata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaagtgaaagtgctttgattcttcatacttaggaatttgtttgataaatatgaagtata 560

                                                                       
Query: 361 ttcttccttcttctgtgggatatgtgggtagaactgagcattgtgaaaaggaattgattg 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 ttcttccttcttctgtgggatatgtgggtggaactgagcattgtgaaaaggaattgattg 620

                          
Query: 421 aaattcccaacatta 435
           |||||||||||||||
Sbjct: 621 aaattcccaacatta 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)