BAC Information

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BAC

Clone NameMSMg01-441G07
Chromosome1 (Build37)
Map Location 99,302,154 - 99,302,397
singlet/doubletsinglet
Overlap geneEG634346
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331
Downstream geneD1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441G07.T7 (MSMg01no441_g07.b1)MSMg01-441G07.TJ (MSMg01no441_g07.g1)
ACCAG531285AG531286
length769764
length of high quality
(start - end)
393 (74 - 466)246 (81 - 326)
definitionCHROMAT_FILE: MSMg01no441_g07.b1 PHD_FILE: MSMg01no441_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:09 2005CHROMAT_FILE: MSMg01no441_g07.g1 PHD_FILE: MSMg01no441_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGACATCCG
CGGAATTCTCTGGTTGACTTTTTGGAGTCACTTAAGCATACTATCATATC
ATCTGCAAATAATGATATTTTGACTTCTTCCTTTCCAATTTGTATCCTTT
GATCTCCTTTTCTTGCCTAATTGCTCTGGATAGGTCTTCAAGTACTGTAT
TGAATAGGTAGGGAGAACGTGGGCAGCTTTGTCTAGTCCCTGTTATTGGT
GGGATTGCTTCAAGTTTCTTTCTAATTAGTTTGATGTTGGCTACTGGTAT
AGTGTATACTGCTTTTACTATTTTTAGCTTTGGGCCTTGAATTCCTGATC
TTCCAAGACTTTTGTCATGAAGGGGTGGTGGATTTTGTCAAATGCTTTCT
CAGCACCGAGTGTAATGATCATATGGATATTTTTATTTGAGTGTATTTAT
ATAGCGGATTATGTTGACGCTTTTCTTTTCTCCTTTCTCTCTCCTCTTTC
CCTTTTCTTTTCTCCTTTTTTCCTGCCCCTTATTTTTTTTCCTTCTTTCC
TTACTTATACTCTCTTTTCCTCCCACTTCCATTTTTCTATATCCATAATA
TTATTTCCATTTATAATCATCCCCCCTTCCCCTCTCTTTATCCCCCCTTT
ATTACTTTTTTTTTTTTTCTCTTACCGACCCCCCCACTTTCCACTTTCTT
TTTTTCTCTTCCCCCTCCCCTTTTTCTTTCAATCTTTTCATCCATCCTTC
ATTTACCACCCTTCTTCTG
NNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGATTTCATAAAAAAGGCA
CTTATAGAAATAGATGAAAATCTTATGTAGAATATCCACTTTGCTCTAGA
AGGATTCAACTATTCTCAAAAACTACAGCATGAGGGCAGTCAGTGCTCTG
GCCCTAGCTCCCGCTCACACCAACCCTGACATCCAATTCCGTCCACCCAA
GAAATGCTAGTTCAGTTCTTCACAGTAAAAAACAAGAAAATCTCAAAATT
AACATGAAATTATGAAAGACCAAGTTAGTGTCTTCAACCAACCTGGAAAA
TAAGAACACTGGTTGAGGTATCACTCTATGTGATTTCAAGTTATTCTATA
AAAGAACATGGTACTGGCTCAAAAATGGACCTGGTAATCAATGTAGTAGA
AGAACAGATATAACTCGATGCAACTAGAGCCACTGTGGTTTTGACAAATG
ATCTCCAAAATATAGATTGGAGAAGGTAGTGTCTTCAGCAAATGTTTCTG
GAAAAACTGGACATCTGTAGGTATAAGAATAAAGTATGATTCTTGTCTCT
CACCCTGTACAAATAAATCAGTTATGAACGCATAAATGACCCACCCCCGT
ATTATACCCGTATCTCTGATCTATTTAGATGAATTAAATAAAAACCTATT
TTAAGAAAAAGTAAAAAAATTTTTTAATACACATTCTCGCGTTTTGTGAA
TATATTGTTTCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_g07.g1 MSMg01no441_g07.g1 CHROMAT_FILE:
MSMg01no441_g07.g1 PHD_FILE: MSMg01no441_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:09 2005
         (246 letters)



>mm_chr1_99301954_99302599
          Length = 646

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatttcataaaaaaggcacttatagaaatagatgaaaatcttatgtagaatatccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgatttcataaaaaaggcacttatagaaatagatgaaaatcttatgtagaatatccact 385

                                                                       
Query: 61  ttgctctagaaggattcaactattctcaaaaactacagcatgagggcagtcagtgctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgctctagaaggattcaactattctcaaaaactacagcatgagggcagtcagtgctctg 325

                                                                       
Query: 121 gccctagctcccgctcacaccaaccctgacatccaattccgtccacccaagaaatgctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccctagctcccgctcacaccaaccctgacatccaattccgtccacccaagaaatgctag 265

                                                                       
Query: 181 ttcagttcttcacagtaaaaaacaagaaaatctcaaaattaacatgaaattatgaaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcagttcttcacagtaaaaaacaagaaaatctcaaaattaacatgaaattatgaaagac 205

               
Query: 241 caag 244
           ||||
Sbjct: 204 caag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)